Array 1 6041-5416 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTLO010000010.1 Listeria welshimeri strain FSL W9-0273 NODE_10_length_112544_cov_68.225239, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      6040	    36	 100.0	    30	....................................	ATTTGTTACTGTGTTTCTTGCATCTTTCCG	
      5974	    36	 100.0	    30	....................................	CGTGACAACTATGAGTGCCAAGAGTGTAAG	
      5908	    36	 100.0	    30	....................................	TATGAATATAGCGCTTTATGCGTATCAGAA	
      5842	    36	 100.0	    30	....................................	GGAATAGGTAGACGTTAAGCCTGCATGGTC	
      5776	    36	  69.4	    22	.................C.ACC..AATC...GC..T	ACTGAGAAGAACTGCAGATGGG        	GTA [5757] Deletion [5719]
      5715	    36	 100.0	    30	....................................	AAAAGATAAATCATTAGAGCAAGTGTTCTT	
      5649	    36	 100.0	    30	....................................	GTATGAAGAAAAGAAAAAAGCGGTTGAAGC	
      5583	    36	 100.0	    30	....................................	TGGAGGGCTTTTGCTTGCCTTTGATCGATT	
      5517	    36	 100.0	    27	....................................	GAATATTCTCCCCCATCGCTAACAGGG   	
      5454	    36	  83.3	     0	............CA.....C.....A.A.......G	|                             	C,A,T [5419,5422,5427]
==========	======	======	======	====================================	==============================	==================
        10	    36	  95.3	    29	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAACTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATTACTATTCTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGC

# Questionable array : NO	 Score: 6.00
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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