Array 1 12425-17774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJITG010000067.1 Xanthomonas translucens pv. translucens strain ATCC 19319 Contig_70_282.101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 12425 31 100.0 34 ............................... CGCGTCTGCCGGGCGAACTCCGAAGTCATCGTGC 12490 31 100.0 34 ............................... CGCTTGTCCGCTAGCGCACCTTCCGAGAAGTAGG 12555 31 100.0 36 ............................... TGGTTGTCGTCCACCAGACGAAGCGTATCCGCAAGT 12622 31 100.0 34 ............................... TTAGCCGTCGATGTAGGGTGTCCGTATACGTTAC 12687 31 100.0 34 ............................... GGCAGTAACCTGCCGGGCGTGCGGCGCGATGCGC 12752 31 100.0 34 ............................... ATTTTAGAGCCTCCCGACAGTCAGAAACGAGCTT 12817 31 100.0 36 ............................... GCGCTCACAGTACACACACAAGGGATGCTGCATCAG 12884 31 100.0 34 ............................... CGCCGAGCGTTGACAAGGTCTCCAGGACCCGCCT 12949 31 100.0 35 ............................... TTTGCCGGCATTGGCGGGTGGTCACTCGCACTACA 13015 31 100.0 34 ............................... CGGAACCTTGGTCAATGCTCGCAGCGCCATGTCA 13080 31 100.0 35 ............................... TTCACTGCCACCTCGGCGCGCAAGCGCGCCGGGGC 13146 31 100.0 36 ............................... CAGATCAGTGAGTACAAGGTCGACCCAAGGCCCGAG 13213 31 100.0 35 ............................... TTCACGAAATCATCCTCGTTCTCGGTCGCGATCTC 13279 31 100.0 34 ............................... ACCGCTTCGGAGTACGCGGGGCGCAGCGAGCTAA 13344 31 100.0 34 ............................... CTACGTCCGGCAAGTACATATTCGCCTGCCGCGC 13409 31 100.0 35 ............................... TGTGGTCTTGCCTTCCGGGCCGACGGCGGCCACAC 13475 31 100.0 35 ............................... TCTTTGGCGGAGCCGTCGGCCAATACGGCGTCGGG 13541 31 100.0 33 ............................... ATTGCTCCGCTGTCGCAACAACGCGGCAATGTC 13605 31 100.0 34 ............................... TTAATCCGCGCGCCAACCAGTGCCACCACACCAA 13670 31 100.0 34 ............................... ATGCGCTGCGCTCCTGGTGGTCCTGGTGGAAATC 13735 31 100.0 35 ............................... CGTCGCTATGAAGCCGCGCAGGTCTACATCTTCGA 13801 31 100.0 35 ............................... TTGAGCGCTCTGGTGACTTTGCTTTAAACCGTAGG 13867 31 100.0 33 ............................... AAGTACCTCTGTGCGCTCGACAACCATTGCAAA 13931 31 100.0 35 ............................... GTACATCCTGACCCCAAGGAGCACGCCATCTCGCA 13997 31 100.0 35 ............................... TAGACCCGGCACTGCGTGTGAAGCTCTGGGCGCTT 14063 31 100.0 35 ............................... ATCATCACGGGCGGCAAGGACAACGATGCGTCGCT 14129 31 100.0 36 ............................... AGGTCGTCTGCAGCCTTGTAGAGCGGCGACTCGCGC 14196 31 100.0 35 ............................... CGGCATAGTTGCCCCGCAGCTGCACTGCAAGCGTC 14262 31 100.0 35 ............................... CAGCTCCCGCTCCGCTGCGCTCTGACGTGCTTCCT 14328 31 100.0 34 ............................... TTCGGTACCGCCAAGCGCGGGACTACTGCCGGGC 14393 31 100.0 34 ............................... GCACCAAAGCTGCCCGGGATGGTGTCACCGACCG 14458 31 100.0 35 ............................... ACCTTGACGCCGTGGCTGGTCCGAATCGAGCAGGG 14524 31 100.0 35 ............................... TGTACGAACACCCCGAGGACATGGTGGCTGACGGC 14590 31 100.0 35 ............................... CCGCTCATCCGCGTAGATATCCGTGCGGAGGTGGT 14656 31 100.0 33 ............................... TTGAGCGCTCTGGTGACTTTGCTTTAAACCGTA 14720 31 100.0 34 ............................... AGGGCACCGTGGAAGCCATCGAGAACCTGCCCAG 14785 31 100.0 33 ............................... TGGCTCGGCTGGTATCACTACCTGGCCGCACTC 14849 31 100.0 35 ............................... AGTACGTATGTGGGCGACGTAGGGCACGCGATGGT 14915 31 100.0 34 ............................... TCTTGTTCGGAGTCCATTGTCGCGGACTACCTGT 14980 31 100.0 35 ............................... CGCACCAGCGGCATGGGCGCGCAGGGTGTAGGCAC 15046 31 100.0 33 ............................... ACTGCACAGTAGCGTCGTCTTGCCCGCATCCGG 15110 31 100.0 35 ............................... CGTTCACGGCTGCACCTCACACCGCATGCTGAACC 15176 31 100.0 34 ............................... TTGCTTCGCTGCGTTTGTTTCTGCATATTCAAGG 15241 31 100.0 35 ............................... ATGTCATTCGTCTCTTTGTTGGGTTTGGGTCAGGC 15307 31 100.0 36 ............................... AACAACTTACGCACCCGGTAGGGTGCGTATGGTGTA 15374 31 100.0 36 ............................... CTATCGGTAGATCCGCGCAGATATGGGTTGTCCCAT 15441 31 100.0 35 ............................... TTCAACTCGCTACCCTTGGCCTTGCGGATGCGCTC 15507 31 100.0 33 ............................... CGTTGATACGTTCGTGCGGGGCAACAATTTCAG 15571 31 100.0 34 ............................... AGCAAATGACGGTGCAGTCCAACGATGCAGGGTC 15636 31 100.0 34 ............................... TTAAACTCACCCTGAGGCACACCGCTATGCAGTC 15701 31 100.0 34 ............................... CAGAACCGCAACTGCCGATCTGCAGCATTACACA 15766 31 100.0 37 ............................... TCGGGTTGCGCTACCCACCGCACCCTCACTTGCTGAC 15834 31 100.0 35 ............................... ACGCGCACGCGCTGCCCGGCGTAGAAATCGGCACG 15900 31 100.0 36 ............................... AGTTCGTGCTTGTTTGCCGTGCCGATCAACACGAAG 15967 31 100.0 34 ............................... TTGTTGCAGTCGCACGGCACGACGCTGGCCACCC 16032 31 100.0 36 ............................... CCGGCATCCGGTATCGTGCTGAACCCGGCTGATTGG 16099 31 100.0 33 ............................... TTCCGCGCCGCGTCCACCTCGGCCGCCTGCTTC 16163 31 100.0 34 ............................... TGCCCAGGACCCTCGACGTACAGCACCCCCAAAC 16228 31 100.0 34 ............................... TGCACGACGAGTTCCTGGCTCGGTGCCAGGACCA 16293 31 100.0 34 ............................... TTCAACAACTTCTCTGGCACTGCGATCTTGTCGG 16358 31 100.0 34 ............................... GGTCTTGCTGGCGTGCCAGTTGCTGGTTGAAGCA 16423 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 16489 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 16555 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 16621 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 16686 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 16750 31 100.0 37 ............................... TTGAGCCCCACGATCGCCTCGGCGGTGCGTGTGAAAG 16818 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 16884 31 100.0 35 ............................... TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 16950 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 17015 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 17081 31 100.0 36 ............................... TGCTCTAGTCTGTCTTTATTTTTCAGGTATAAAAAG 17148 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 17214 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 17280 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 17345 31 100.0 36 ............................... TTGAGTTTCAGCTCTGCATCGACGGCCCGGATGCGG 17412 31 96.8 36 ....................C.......... CGCACGTTCGACGGCCCCAGGTGGAGGAACGCCCCG 17479 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 17544 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 17609 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 17676 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 17740 31 93.5 0 ...............C.........G..... | T,G,G,C [17744,17748,17750,17768] ========== ====== ====== ====== =============================== ===================================== ================== 82 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCTAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCACCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //