Array 1 21812-23159 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHIC01000021.1 Staphylococcus pseudintermedius strain SP130a Contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21812 36 100.0 29 .................................... GATGAACCTAAAAAGTCATCAATGTTTGA 21877 36 100.0 29 .................................... ATATTCACGCAATTTATGCCACTCTTTCA 21942 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 22007 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 22073 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 22139 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 22204 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 22269 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 22335 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 22400 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 22466 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 22532 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 22599 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 22664 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 22730 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 22796 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 22861 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 22927 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 22992 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 23057 36 97.2 30 ............................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 23123 35 88.9 0 ..........................-.CA.C.... | TC [23156] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 98.7 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 144737-145698 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHIC01000002.1 Staphylococcus pseudintermedius strain SP130a Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 144737 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 144809 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 144879 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 144951 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 145024 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 145094 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 145167 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 145238 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 145309 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 145381 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 145453 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 145524 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 145593 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 145664 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 154423-154744 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHIC01000002.1 Staphylococcus pseudintermedius strain SP130a Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 154423 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 154494 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [154509] 154569 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 154638 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 154711 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //