Array 1 1173516-1176500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042174.1 Oerskovia sp. KBS0722 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 1173516 29 96.6 32 ............................T CCGCGCGGCTGGGCTCACAAGAACATCTTCTG 1173577 29 100.0 32 ............................. CAGCTCGCGGACTGTGGCGAGTTGGCGCAGCG 1173638 29 100.0 32 ............................. CAGGCTGGCGGCGCGGACTTCGGCGTCACTGT 1173699 29 96.6 32 ............................G GGGTCGACGTCGACGGCGATGGTCGTCAGCGG 1173760 29 96.6 32 ............................G GTGGAGCCGGCCCCGCAACAGGTGATCGTGGG 1173821 29 100.0 32 ............................. AGCTCGAACGTCGCGGGCGTCCCGGCCTTGGT 1173882 29 100.0 32 ............................. GGACACTTCGACTCGCGGGAGGTGCTCCGTGA 1173943 29 96.6 32 ............................G TCGGCCATCAGTCGGGCGCCCGTGATGGCGTG 1174004 29 96.6 32 ............................G TCGGCCATCAGTCGGGCGCCCGTGATGGCGTG 1174065 29 100.0 32 ............................. TGGAGCGTGATCGTCGTGCCGTCGTCGAGCAG 1174126 29 96.6 32 ............................G GGGTGAAGTTCGACTTGCGAGACAGGCCTAGT 1174187 29 96.6 32 ............................G CCCGCCGCCCTGGCGCCCACCGAGGAGAAGAC 1174248 29 100.0 32 ............................. CGGAACGAACTACTCGACTTCGGGCTGTCCAT 1174309 29 100.0 32 ............................. TCGCACCACACTCTGGCGGCGCTTGAGCCTCG 1174370 29 100.0 32 ............................. CTGAGCCCGGCCATCACCATGCGCCGCTCAAC 1174431 29 96.6 32 ............................T CGTGGTCCGTGCGGCCTCCACGGCCTGCGCCT 1174492 29 100.0 32 ............................. CTCGGTTGCTGCCTCTGGTGGCGTTTCCGTTG 1174553 29 100.0 32 ............................. GGGGGCGTTGATGACGAGGTCGCCCAACCACT 1174614 29 96.6 32 ............................G CCGCCCGGAACCCGAACGTGGGACCAGATGGT 1174675 29 100.0 32 ............................. ACGTGGTCGAAGTTGTCCCCGAGGGAGCGGTT 1174736 29 96.6 32 ............................G CAAGGAGGACGTACGCGTGACTGAGCGCAAGC 1174797 29 100.0 33 ............................. AACTGCCCGGCGAAGTTCGCCATCCCGACGAAG 1174859 29 100.0 32 ............................. GACCCCGATGCCCGGCTCTACCGGCAGCTATT 1174920 29 96.6 33 ............................G ACCACGAACGCCGCCGCGAACATTCAGCTCATC 1174982 29 96.6 32 ............................G CGCGGATGGAAGGAGGGCCACGGCGACCTCGT 1175043 29 96.6 32 ............................G CCGATTGAGTTCCGCAAGCCGGGCGAGAAGGT 1175104 29 100.0 32 ............................. TCGAAGCGGACCGCGTCGGCGACGTCGAGGTT 1175165 29 100.0 32 ............................. CTGGCGCAACTGGTGCCGCAGCGAATACGAAA 1175226 29 100.0 34 ............................. CAGGGGGGTACAGCATGGGCACCATCTACGTTGT 1175289 29 96.6 32 ............................G TGCTCATGTGGCCTCCACGGTTACCTAGCAGG 1175350 29 100.0 33 ............................. ACCGGGTCGACCTGCTCAAGAGAGACGACCGCG 1175412 29 100.0 32 ............................. TGCGTACCGTACTCATCGATGGTGTCGAGCCA 1175473 29 100.0 32 ............................. GTCACCGCCGGCTCGGCGACTACCGGGGCCGC 1175534 29 100.0 32 ............................. CAGTCCGATAACCACCGGCAGAATCGCACCCA 1175595 29 96.6 32 ............................G CGCGGTGCAGCTAAGACCAACGCACGACGTCC 1175656 29 96.6 32 ............................G GCTCCAGACACGGCGAGACGAAGCCACTGCAT 1175717 29 100.0 32 ............................. TGCCCGACGGCGCCGTGGTGGTGGGCATCGGC 1175778 29 96.6 32 ............................G GCCTTCAACTTCATCAGCACCCGCCAGCTCGC 1175839 29 100.0 32 ............................. GAAGTCGTTGAACTTGCGCTTCGCTATCGCAC 1175900 29 100.0 32 ............................. CATCGTGGTTCTCCTTGTTTCGAGACCCAGCC 1175961 29 100.0 32 ............................. GGCGCCAACTGGGCCCAGGCGCCCAAGGACGC 1176022 29 96.6 32 .......T..................... GCGGGCGCCACCGACCTGCGGATCGACCCGGC 1176083 29 100.0 81 ............................. GTCGGCTCGGGGGCGGGGGCGGGGGCGGGGGCGGGGGGGCGGGGCGGGGGCGGGGGCGCGGGCGGGGGCGTCGGGCGTCGT 1176193 29 79.3 6 ......................C.TCGGG CGTCGT Deletion [1176228] 1176228 29 100.0 32 ............................. ACGTCCTTCCCGAAGCGGGCCCGCACACTGAG 1176289 29 96.6 32 ............................G CACGTCCGGTTCGGCATCGAGAACCTGACTTC 1176350 29 96.6 32 ............................G GAGCGCAGGATGTGCTCGTACGTGAACCCCGA 1176411 29 96.6 32 ......................G...... CCGACGTGCTTGGGGTCGGCGGCGTCGTACTG 1176472 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================================================================= ================== 49 29 98.1 33 GTGCTCCCCGCGCGAGCGGGGGTGATCCC # Left flank : GCGAGCTCACACGGTGGCTCCTCGAGGTCTCCGCTGGAGTGTACGTAGGCCACGTTCCCGCCCGGGTCAGAGACATGCTCTGGTTGCGGATCGTTGAGGACGTGGCGCGCGGGCGTGCCCTCATGATCCACACGGCCCGCAACGAACAAGGGATGTCGCTTCGGGTCCACAACCATGCATGGGAAGCTGCTGACCACGAGGGCCTTGTTCTCATGCGGCGGCAGACCGCGGAATCCCGTGCACTTGCCACAGAGCGCAAGGCCGCGCGACAACAGCCAACTCGCCGCCCGCGCACTGACGTGCCTGACGACGGAGACGCCCCACCGCACCCCACCCCGGGACGGACCTGGAGCCATGCCGGACGGCGCCGTCGATACCGCAACAGTATCGAGCGGAGACGGGGAGACGCCCCGAACGACGAACCCGAGCCGCCGCCGTGACCCCTAGAAGAAGTGAATGGGAAAGTCGACGGACGCGGATATAGTCGCAGGTCATCGAGT # Right flank : GAAGAGGCCTCGCCAGGCGTCGAGCGCTCCGCGGCTCTACCCTGCCGGGACCTCGCCCACCAGCGCGTCGTCCTCCACGGGGGGCTGCACGTCGGCGCCTTCCTCGCCCGGGGGCACCGTGCCCTCGTCGAGGGGAGCCGCTTCGACGACGAGCGGCCAGGGCTGTCGTGGGCCGACGTCGGCGGCCCCGTCCGGGGTGACGGAGACGATCTGCCAGTCGACGATCTGTCGCTCGACGGGGTCGAACCGGAGCAGCGTCATCTCGGCCGTGCCCTTGAGGGGGCCGATGCGGGACGCGTTCGCGATGGCGCCGGCTGTGCTCCCGTTGACGTAGCGGATGCCACCTCCGACCTGCTCGGGGTCGCTCCGCGTGTGCATGTGGCCGGAGAGCTGGGCGGGTACGCAGCCGGAGTCCATGGGGACGTTGCCGACGCGTGGGGTGTGGATGAGCAGGATGTCGATCCCGTCCTCGGCCTTGCACGCGACGTCCGTCAGGCGCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2755000-2752284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042174.1 Oerskovia sp. KBS0722 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2754999 29 96.6 32 ............................G TGCCGCCGGCCCATCGTGCCCGGCACGCGCTG 2754938 29 96.6 32 ............................A CGGCACGCGCCACGGGCGTCGACCAAGCCACC 2754877 29 100.0 33 ............................. CCATCGTCGACTGACCTACCCGCCCCCTAGGAC 2754815 29 96.6 32 ............................A TCGTCGCCGCAGCTGCGACCGTCGCGAGCGAA 2754754 29 96.6 32 .C........................... GCCATGCTCACATACCGATATGGCATGGGGAA 2754693 29 100.0 33 ............................. GCGCCGACCATCACTGACTACGTGCGCTCGGTG 2754631 29 100.0 32 ............................. CCGTCAGTTTGTGCGCCCTTCGCGTACGCCAA 2754570 29 96.6 32 ............................G GACGTCGGTTACCTGGGTGAGGACGGTATTGA 2754509 29 100.0 32 ............................. GTCGTAGCCTGCGTCGTCTGCCATGTCCGGCG C [2754500] 2754447 29 96.6 32 ............................G GTGGGCTGCGAGGTGACCCGGCTCAAGAACAG 2754386 29 100.0 32 ............................. CCGTTGTTCCACCGGTAAAACCGGCCAGCCAA 2754325 29 96.6 32 ............................G GCCCGGCACCTCGTGTGCACGGTCCTGCCGCA 2754264 29 96.6 32 ............................G TGCTCGAGGAACAACGACCAGTTGAACCCGGG 2754203 29 96.6 32 ...................A......... TCGACGTCGCGCATGACGAGCGGGACGAGGGT 2754142 29 96.6 32 ............................G CGCCACTGGACGACGCCGGTGCCCTGGTAGGC 2754081 29 96.6 32 ............................G CGGACCGAGGCCTCGACGATCTCGGCCTCGAC 2754020 29 96.6 32 ............................G CGGACCGAGGCCTCGACGATCTCGGCCTCGAC 2753959 29 100.0 32 ............................. GGGTACCACGAGGCCGGGGTGAAGTACCTGGA 2753898 29 100.0 32 ............................. GCGCGGGCGATCGCAACGGGCAGATCCTGCAC 2753837 29 100.0 32 ............................. TGCTCGCGGTGTACGGGTCGATCTACACCCCG 2753776 29 96.6 33 ............................G GAGTGGGCCGGATTCTCCGGCGACGTGGAGACG 2753714 29 100.0 32 ............................. GACCACAGGGCGTGGTCGCCGGAGGTGTCGGT 2753653 29 100.0 32 ............................. TTCCAGCGACGTCTCACGGCCACGCACGGCCG 2753592 29 96.6 32 ............................G TCAACGGCAGACCATTCAAGTCCGTCACCGGC 2753531 29 100.0 32 ............................. GGTTCGACTCGGTCGTGTCCTACCTGTGCCGC 2753470 29 100.0 32 ............................. CGGTCGCGCACCCCACGAGCAGGGACATCGCC 2753409 29 100.0 32 ............................. CCGGCCGGCCGTCCCCTGCTGGAGGTCGACGG 2753348 29 100.0 32 ............................. TGTGGAAGCCGGTGGGGGACGAACTCATCTTC 2753287 29 100.0 32 ............................. ACGTCGTCCACGTCCAGCCCGGCACCGAAGCC 2753226 29 100.0 32 ............................. GGCGTCACCGACCGACTGTCGGGCAACTCCGG 2753165 29 100.0 32 ............................. CCGGTGCGCGAGGTCGTCGCCGGATCGTCGGC 2753104 29 96.6 32 ............C................ GCGTTCACGGTGCCGCCGATCGCGCCCGGGGT 2753043 29 100.0 32 ............................. GCCAGTACTCCACGAGCGCGACCAGCCACACC 2752982 29 96.6 31 ...........A................. CAGGGGGACAGCATGGGCACCATCTACATCG 2752922 29 96.6 32 ............................G GGCGATGTCGTACCTCTTGGCGGTATGAGCAC 2752861 29 96.6 32 ............................G CTCGATGAGCACTTCGAGATTCGCGTCATGGA G [2752839] 2752799 29 100.0 32 ............................. CCGGCGGTGTCGAGCAGTTCCGCGTCGTCGTC GG [2752776] 2752736 29 96.6 32 .C........................... GTCCTGAGCCGAGAGCACATCTACCATCCGGG 2752675 29 93.1 32 ...........A................G GCGAGCAGCACGACGGCCAGGCCGACATGACG 2752614 29 96.6 32 .....................A....... CTGTTCCTGTCGCACTTTGCGCTCGTGCTCGG 2752553 29 96.6 32 ............................G CACTTCTGTTCCAGGAACAGGTGCGACGCGCC 2752492 29 100.0 32 ............................. GCCTACGAGGACCGGCGCACGGATCACTGCGA 2752431 29 96.6 32 ...........A................. GTCGGCGACGTGCGACGACTCACGAAGGCGTT 2752370 29 89.7 27 .C.....................A.G... GATGGTGTCGTCGTGCACCGCTTCTCC CC [2752346] 2752312 29 72.4 0 .C.......T....C...AA.AC..C... | ========== ====== ====== ====== ============================= ================================= ================== 45 29 97.3 32 GTGCTCCCCGCGTGAGCGGGGGTGATCCC # Left flank : GCGCGTACCCGGGCAGGACGAGGAGCCGATGTCCGGGGCGCCGAGGACGACCCCTCCCGGACGCGCTGACTGCCGTGCTGGTCGAGCGGCTGACGCCCGACGAGATTCTCGCCTTCGCCGCCGTGGCTGACGAGGTGCGCGCATCTGCCTACGCCTGGGTTGTGTGGGGCGCGGCGCTTCTGATCGAAGGGGGGTGCAGCGACGACGGAGGTAGGCGCCGCGACCGAAACGGCCGGTGAGAGCTGGGACTTCGACGACGAGGACGAGAACGGCCGCCACCTCCCCGGCTCGCGGCGCTCTTCTCCTGACTACCCCCTGAAGACCTGGACGACGATGCTCGTGCGGGACTGCCGCCGAGCGGGAGACCCGCAACCCAGTCATCAACAAGGGTGCCTCGTTCGTCAGAGCAGGGAGTGTGAGCGGAGGCCCATGCGGTGGTCGCCGCCTGAGAAGTGAAGGCAATACGCTGACAACGGCGGTAAAGTCGCAGGTCAAGAAGT # Right flank : GAGTTCTCACCGCTCGACCACCTGCGGCCGCCCACACGAGCGGCCGCCCCAAGGGCGCCACCGCCCCACGAGCGCGCCTGGCTCTCAGACGTCCTCGACGGACGCCGGGACCAGGCCTCCGAGGGTTGCCGCGGCGGCGCCCAGGACGAGTCCCACGCGCAGGTGCGGGGCGCGCACCCCGCGGGCACGCATGCGCTCGCCCCAGCGGTACGCGCCCTTCTCCCCGACGACGGCGAACGCGGTCGTGGCCCCGAGGACGGCGACGGCCCCGACGGCGATCGCTACCTTTCCGCCCGGGGTGATCTCGACCGGCGTGAGGGAGTGCAGCGTGTTGTCCGGGGCGTCGTCGGACGCCTGCTCCCAGAGCGCCGTCGTGCCTGCGGCGGCGTCGGTGCCCTCGGTGTCCCGCAGGGCGTCGCGGACCTTGCGGACGCCGTCGATCGCCTGACGGCCCTCGCTGGTCCGGAGGAGCACCACAGCGCCGGCGACCCCGCAGGCCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //