Array 1 8858-10532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXWZ01000032.1 Escherichia coli isolate Milk cow fecal, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8858 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG 8919 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG 8980 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG 9041 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT 9102 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 9163 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC 9224 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA 9285 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG 9346 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT 9407 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTTACAACTAA 9468 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT 9529 29 100.0 32 ............................. GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT 9590 29 100.0 32 ............................. CGCTGGCGGTGCGAGTGCTGGAGGCGCTGAAA 9651 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 9712 29 100.0 32 ............................. TCGGGCGGCTCTGGTGTTCCTGACATGGCGGC 9773 29 100.0 32 ............................. AATTTGCATCACATAGGGGCGAGGCTCAGTGA 9834 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTCCACGTA 9895 29 100.0 32 ............................. CCTGTTTTTTGTGCGGGGAATTATGGGGGAAT 9956 29 100.0 32 ............................. TTATACTGATTTTGATTTGTATTTCGGTCGCT 10017 29 100.0 32 ............................. ACACGCCCTGCCGTATTTACTGACGCGCAGGA 10078 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 10139 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 10200 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 10260 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 10321 29 100.0 32 ............................. CGATAGCATTCGCCCGACTCTAACAACGGGGT 10382 29 100.0 32 ............................. CAAAATCCTGCCGGGAAAAAATCGACAACCAT 10443 29 100.0 32 ............................. CCGGTGTAATCAAAGAGAAAAATCGCCTTTTT 10504 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGTTAAGAGGGGGTTTTTCCCATAAGCGCTAACTTATTGCTGAGTCTTATACACATCTCCGAGCCCACGAGACCCTACTAGATCTCGTATGGCGTCTGCTGCACGAAAAAAAACATCAACTCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134999-134787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXWZ01000009.1 Escherichia coli isolate Milk cow fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134998 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 134937 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 134876 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 134815 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTTAGCGCTTATGGGGTTTTTCCCCACCGTTCAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43000-43211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXWZ01000008.1 Escherichia coli isolate Milk cow fecal, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43000 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 43061 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 43122 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 43183 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATGACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //