Array 1 1053321-1052713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134350.1 Actinomyces howellii strain NCTC11636 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1053320 36 100.0 33 .................................... ACGCCGTCAGACTGGAGCTTGTCGATCTCCGCC 1053251 36 100.0 36 .................................... CGTCCGATGAGCCACATCGCTGCGGTCAGGACGACG 1053179 36 100.0 35 .................................... CGGGAGGGTTACCTGGAGGCGACGACGAAGGACGT 1053108 36 100.0 35 .................................... AGCCGCACGCTGTGCCGCGGCGCCCGGGTGGACGA 1053037 36 97.2 37 .......................A............ GACGGCGAGGAGCAGGCACGCAACATCCAGATTGCGA 1052964 36 97.2 34 .......................A............ GCTCACCACTCATCTTGGTCGGGTCGAATGAGAT 1052894 36 97.2 36 .......................A............ ATCATGAACCGGCGGCCCAGGTCGCCGCCGCGGAGG 1052822 36 97.2 38 .......................A............ TCATAGGCCGCCTCGACAACGACCTCCTCCTGGCCGCA 1052748 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 98.4 36 GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Left flank : CACGAAAGGCTCACCCTTGTGGCGCAGCTGGGTGATGACCTCGATCAGGTCAGGGGCCTGGGAGGAGATGACCTGGAGGGCCTCATGCAGGTACCTGTAGGCGGTGGCGATCGAGATGCCGGCGTCTCGGGCCAGGGTGCGCATGCTGGTGGCCTCGTTGAGCCAGCGCAGCACCATCACAGCCTGCACCCAGGGCGTCGCCGCCCTCTGATGAGGCCGAATGTCGTGCCAGCGGCGGTGAGCCGCCAGCCAGGCTGACACGGTTCGGGCGGTAGCGGATGGCACGTCAAGGGTGGCACGATAGGACAGCATGCGGGGACCTCGCATTCAGGGGTGCTTCTTTGGTCAGAACCCATCCTGGATGCGCTCCCCGCGTGCACCCCCACACGACACGCACCCTCCCCCAGCATCCCAACGATCAGGCCGGGTGCACGCCCCACCCCGGTGAGAAAACCTCATTGAGGCACCGGCAACTTCCGCGAGGCCCTCGAAAAGGGGGA # Right flank : AGGTTGCGCTGCGCGTAGTCCTTGTGTTGGTTGAACAGTTCCAGCCCCTCGTCATGCTGGCGCTTTCATGGGGCTGGGTGGGTGTGAAGGCACCATGGTGCCTTCACACCCACCCCCGATTCCGTGCCTCGGTGGGAGAAGCGCGGGTGAGCAACTGGGGATGGCGTCATACCACTGTGTGGCATGCACCAGACCAGCGCGACCGTGCGCCCAGGGGAGGGGGGCGACCTGGCCTCAGATGCCGAACCGACGCTCGGCCTCACCGATCTCCACCTAGGTCAACGAGCCGCTCAGGGATGAAAACCGTCGTGCCCTTGTCGTCGGTGAGGGTGACGTCCTGGGGCGACGCGTCCGTCGAGATCCTCCGGCGGTGTGATCAGCGCCGGCCGGATGAGCCGAGTGCGGGTACCACGGGCACGTGCCTCTGGTGATCATCCGACCCGTGGCCGGGTCGCACCCAGATCGCGGCGATCTTCATCGGGTGCACACTCAAAAATCTG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Alternate repeat : GTTGCAGCCCCTTCGGGGGTTGCACTTCATTGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1054311-1056274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134350.1 Actinomyces howellii strain NCTC11636 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1054311 36 91.7 37 AG..........T....................... CCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT 1054384 36 100.0 34 .................................... CCGGCGCAGACGGCGACACGATGCGGGCGGCGTC 1054454 36 97.2 39 ...........................A........ CTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA 1054529 36 100.0 33 .................................... GGGTGACGGCGCCCTTTATGCGGAGTGCGAGGT 1054598 36 100.0 34 .................................... CGAGCCACGCGACGCAGATCCGGGGCGTGTAGTC 1054668 36 100.0 34 .................................... ATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGC 1054738 36 100.0 37 .................................... CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT 1054811 36 100.0 36 .................................... CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA 1054883 36 100.0 37 .................................... TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC 1054956 36 100.0 38 .................................... AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC 1055030 36 100.0 38 .................................... GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC 1055104 36 100.0 35 .................................... GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT 1055175 36 100.0 36 .................................... GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA 1055247 36 100.0 34 .................................... GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC 1055317 36 100.0 35 .................................... TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG 1055388 36 100.0 34 .................................... TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT 1055458 36 100.0 36 .................................... CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG 1055530 36 100.0 35 .................................... GTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGT 1055601 36 72.2 34 ..................AT...CGCT...A.TCG. CGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGT GG [1055622] 1055673 36 100.0 35 .................................... AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC 1055744 36 100.0 34 .................................... CAGATCGCATGAACGCCGGCTTGACCGTGGACCT 1055814 36 100.0 35 .................................... TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC 1055885 36 100.0 35 .................................... ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT 1055956 36 100.0 33 .................................... AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG 1056025 36 100.0 35 .................................... CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA 1056096 36 100.0 36 .................................... CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT 1056168 36 100.0 35 .................................... CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG 1056239 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 28 36 98.6 35 GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC # Left flank : GCCTTTCGTGTGCCTGGATGGCACCCTGATCCGCACCGACAGGGTCGCAGCCCGCACCGAACGGGGCAACCACTCGTGGTACTCGGGCAAGCACAAGGCCTTCGGGGGCAACGTCCAGGTCATCACCGACCACACCGGATTCCCGGTGTGGGTCTCGCCGGTCGAGCCGGGCTCGACCCACGACCTGACCGCTGCGCGCGCCCACGCGCTGCCCGCCCTGTACAAGGCCGCCTCCCAGGGCATGCCCACCCTGGCCGACAAGGGCTACATCGGCGCCGGCATCGGCGTGCTCACACCCGTCAAGGGCGCCAGACCCTGCCCCGACGACGCCACCTACAACCATCTGCACGCCAGTCTGCGCTCGCCTGCCGAGAGGGCCAATGCCATGCTCAAGCACTTCAAGGCCCTCCAACACGTCACCCTCGACCCGCACACCATCACCCACATCACCGCCACAGCCCTCGTCATCATCAGCCTCAACAAACAACCCCGGTGAGAAA # Right flank : CCGACCACATCATACCCCGCCGCATCGCGCGGATGTCGAGGGGCCACGCGAGCGCTCGGTCCTCGGCGGGTGACGGCGCCGGTCCGCCGTGCGCATCTCAACCCGACAACAGCGCCGTTGCAACGATCTCCTGGCGGCGAGCGCTCCCCGGGGATCCGCGTAGCACTCGAGCGCTCGCGTCAGGCGATGAGGGGACCGTCCGGCGTGATCGTCCGGGTCAGTCCCACGTAGGAGAACCGCGCCGCGTCGACCGATGAGAGCAGACCCACGTCACACAGCAGGATGGAGTCTTCCTCGGGGTCGACAAGACCATCGAGCTCACCTCGCAAGCGGAGAAGCTTAGCAGGTGAGGCATCGACGACGAAGACTGAGTACTGGATTCGATCCCCGTACTTCAACAAGCACTTCGCGACTCTGGCTCGACGTCGATCAGACGGTACGTCATATGCCACCAGAACACGTCTCACATCGTCACGCATCAGCGCACCGTGACTCCCCGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //