Array 1 361827-355291 **** Predicted by CRISPRDetect 2.4 *** >NC_017275.1 Sulfolobus islandicus HVE10/4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 361826 24 100.0 40 ........................ TACTATCAATATCTTAAGGCTTTCAATATCTCGGAGGACT 361762 24 100.0 38 ........................ AACTTGACTTTTATCACGGTCGCCTTTTGAGCGACCGT 361700 24 100.0 40 ........................ AGTATTTAAATTTTTCTACTCGTTTTTCCCATTAAAGTAA 361636 24 100.0 42 ........................ CCACCCATACTACCGGCTGGAATGCCCGGTGGCTTTGCAGGG 361570 24 100.0 39 ........................ CTTACAATACCTCCTTTTTATTTTTATTGTAAAGTTACG 361507 24 100.0 45 ........................ ATCCTGAGAAGACTAAGGCATTATTTATCAATACCGGTATAGCGA 361438 24 100.0 42 ........................ ATTTATGCTAATATGACATTTGCTTATACGGGTGGCGCTGGC 361372 24 100.0 41 ........................ ACCCACCCGGGGTTAGACAGTTGACTTTTTGCCCTCTCCAT 361307 24 100.0 40 ........................ TCATCGGTTATGTTCTCCAAAAACCTACCCAGTTCTCCGA 361243 24 100.0 41 ........................ AATGTAGACCCTAGCCACCATCCGATAGCCAGTGTCGCTAT 361178 24 100.0 48 ........................ TAGCTGGTCCTGAGATGGTCCACCTATAGAGGACCATAGCTGGTCCTC 361106 24 100.0 39 ........................ ATTATTGTCACAGTTTTATCTTTAACATTTAATTTTGAA 361043 24 100.0 38 ........................ AGTTCAAGTCAACATACATTTTTTGATGGGGGTATTGG 360981 24 100.0 41 ........................ TACTCTTTCAACGTGGATCCTGACAATCTCAGCGATATCGT 360916 24 100.0 41 ........................ TTTTAAAATATTTGAAGTGAGGAAAATTGGAACCTTCAATT 360851 24 100.0 42 ........................ TTATCATATTGTGCATAAGTACTAGTTAATTGAGGGGCCATA 360785 24 100.0 40 ........................ GTAATTTTAGAAATAAATTTTATTTCATTATAATATGGTA 360721 24 100.0 41 ........................ CGCTTTAGAGATTCTAACGCCCTCTCGATCACGGCCTCTTG 360656 24 100.0 41 ........................ TTCCAGATATCTCTTGGACTTCGCCACCTCCACCTCCAAAG 360591 24 100.0 45 ........................ AAAAGCTTTTATATTTTTTTCGTTTAAACAAAATATGAGGGGCAA 360522 24 100.0 41 ........................ ATTGAGGAAAACCCGGTATTACCTACCCCATAAACGGGTGA 360457 24 100.0 44 ........................ TCAATAATATTGAAAGTAACGAGATCTTTCTTCTTTAGTTTTTC 360389 24 100.0 41 ........................ TTTCACTGACCCGCCATTCTATGATGAAATACAATACTCAG 360324 24 100.0 44 ........................ TACAATTACTAAACACGGGTACTGATTTAATTCTTTTATTTTCT 360256 24 100.0 46 ........................ TCTGCTAAATCACCTATGCTATCTTTGATGTATTCCACTACATACT 360186 24 100.0 40 ........................ GTGAGAGAAATAGAAAAATTAGGTTTTGTGTTAACTAATA 360122 24 100.0 42 ........................ CGTATAACGGTTACGCTGGTCCAGGATTGTTCATATACACCG 360056 24 100.0 39 ........................ AGAATTGAAAATGGTGGTATCAGCGTGACTGGTCCCCAT 359993 24 100.0 43 ........................ GGAACATTTTCAACCATAGTGTGACATTTCGATATGTGTCACT 359926 24 100.0 43 ........................ CTAATCTCTTTTGTTTTTCCAAAAGAATTCGCGGAGGAATTGA 359859 24 100.0 40 ........................ ATATAAACTACATAGTTACTTAAATTCTGAAGAATTATCC 359795 24 100.0 42 ........................ TAAGCCTCATTATCCTGAAATACGCAAACATTTGATATTTAT 359729 24 100.0 37 ........................ AGTTGTACCATTTCTGTAAAGATTGATCCGCGGAATT 359668 24 100.0 40 ........................ ACTTCAGCAATTCTTCTATTCTTCTTCTTATAGCGTCTGT 359604 24 100.0 43 ........................ TCAACTTCTTTTCGTTAATCATTATCCTATCCTTAGTACCCGT 359537 24 100.0 40 ........................ ATCAAAACGGCGTAGTAGAGTTAAGATGCCCACAAGACAA 359473 24 100.0 40 ........................ TCTTTTGACATGTTAGAAAGAGTCACAAGTAGGAGGTTCT 359409 24 100.0 40 ........................ TCGTGAAATTGGAAGGAACATTGTTAGGAACTAGAATAAT A [359386] 359344 24 100.0 41 ........................ TCTATAAAATTATCTGAAGTTATTGTTCCAATATCTTCTAT 359279 24 100.0 40 ........................ TATCATCTATTGAATAATCCTTAGATTCCGCCACTGCATT 359215 24 100.0 41 ........................ CTTATCGTAAAGACTGTCTAGTATTTTCTTGGTCTCTTGAT 359150 24 100.0 40 ........................ CAGACTAACGCTATAGATACTTACATGAAGAAGAACCGGT 359086 24 100.0 41 ........................ TGTTCCATCCCCCTCACTCTTGATTATCCCTTTTTTCTCAA 359021 24 100.0 43 ........................ AACGGGTCTTTCTCGATTTCCGTCAATCTGTCGTTATATTTTT 358954 24 100.0 42 ........................ ATTATCTTGTACGCAAATTAGATATTTAAATCTTTCGATAAA 358888 24 100.0 39 ........................ ACTAGTGATGATGGCAGTTATGGTGAAGCAATAATTGAA 358825 24 100.0 40 ........................ TAGATGGAAAAGATTTACGTGAAATCGTGAAAAATGCAGA 358761 24 100.0 40 ........................ CTGACGTTGACAAAGAGTCAGGTTAGGGAGGTGTTTGGTA 358697 24 100.0 42 ........................ CGTTTACTAATGTGTTTCCACTACCCGTTATAGATTCACTCG 358631 24 100.0 43 ........................ AAAATTGTAAATTATCATGTACAATTAGCAAGACATGGAATTC 358564 24 100.0 44 ........................ TTAAACTTATAGACCACCGTCACCAGAAGGAACGGGATGATCCT 358496 24 100.0 40 ........................ CCTCATTCCACAATTCGCGTAAATATTTCCGCTCCTTCTC 358432 24 100.0 43 ........................ TTATTACATTTTCATGCCCAAACATTGATGAACATGCCCTAAC 358365 24 100.0 41 ........................ CATCTCTCAACCCCTTCTTGTAGAGTAGAAGGGATAGTAGT 358300 24 100.0 40 ........................ AGATACTAAACGGTGGGATTAATGTAACGGATCCCCAAAG 358236 24 100.0 41 ........................ TCTTTCCAAGTTTGAATTTCATCAAAAATTAGACCATTTGA 358171 24 100.0 43 ........................ CCGTACATATAGATTTCGCTATAAATAATTTAGAAGCAGCTCC 358104 24 100.0 45 ........................ GTTAGCTATTTGTGTGTACGTACTAGAGTATTGCGAATTCCCTGT 358035 24 100.0 42 ........................ TCATACTCTTCCCCTTCTTTCTGCTTCTAATGCCTCAGCTTC A [358012] 357968 24 100.0 45 ........................ TTGTTATGATACCACGGTGTCCGGGTCTATTCGCGTAAACTTTGA 357899 24 100.0 38 ........................ ATTCATATAGAGATATCCTTATCTTCAGTAGTCGACAA 357837 24 100.0 41 ........................ ATACTACAATATAATTTATGGGTAAATGAGTACCTACCTAA 357772 24 100.0 37 ........................ ATACTTAACACAAGAGACTGTAGAAGATAGCGACGGG 357711 24 100.0 42 ........................ TCTGTTACACCTAACGCTGGTAATACTTGAGCCATTTGCTGG 357645 24 100.0 45 ........................ TCCTAAGATAATCGGCGGAAGGCATAGTGCCACTTAACAGAATGG 357576 24 100.0 44 ........................ TATATAATATATTGTTTTACCTTCAATTTGGTAGAAGTCGACAG 357508 24 100.0 43 ........................ TTCTCTTCATAAGCTCGTCTCATCAGTCTTATAAGGTCATTCA 357441 24 100.0 41 ........................ GTAATAAAAATTGAAAAAATGAGAAATATCAAAAGAGTAAC 357376 24 100.0 40 ........................ ATAATACTAGGGTGAGCGGATAATGCTGCATGCAGCACCG 357312 24 100.0 37 ........................ TTTATTATTATAGTGATGTTGCTTGAACCAGAATTAG 357251 24 100.0 40 ........................ ACATCTGAAGTTGTTAGACCTGCATTTGCTGTTGTTGAAG 357187 24 100.0 41 ........................ TTTTCATGATTATTTATAAGATAGACTGTCAATAAATTAAT 357122 24 100.0 40 ........................ ACGTCAAAACGATAATAGTTCTTTTTATCTTCATCTTGGT 357058 24 100.0 39 ........................ TCTCTCTTACGGCGTCACGTAATGCTTGCTTAATTTTTA 356995 24 100.0 39 ........................ ATTTTACACATTTTTAGGTGGGAGCTCCAAATGGCACGG 356932 24 100.0 40 ........................ TGTGACCATCTGGTTGTTGATTAACTTGGCACGATTCCGA 356868 24 100.0 43 ........................ GTTATATACTTTTCATTATCTATCGATATCCATGATATTTTAG 356801 24 100.0 39 ........................ GCGCTATCCCGAAAAGTCCACCACCTAGCGCTCCTAACG 356738 24 91.7 40 ......................GC CCATGCCATAGCGATAATTGCCTCTATTGTTATACAAGTA 356674 24 100.0 40 ........................ CACAACAACGTGTTGACTAATAGGGGCGATCTATGGATAG 356610 24 100.0 39 ........................ TCTGCTGTCACTGCGACAGCTATAATTATAATCAACAAC 356547 24 100.0 41 ........................ GGTGGTGGTAGAGGCGTGGGGATAACGGAATATGTTTTTTT 356482 24 100.0 38 ........................ CATATTGCCCGAATCAGAATCAGACGCCAAGAAATCGG 356420 24 100.0 40 ........................ TTTGCACCGCTGTTCATGATAGGTTTCGTGTTTGTCATAG 356356 24 100.0 44 ........................ ATGAGATCTCATTCCACTCCTCAATTGGAGTTAGGAGAGTTGAC 356288 24 100.0 39 ........................ ATATACTTCTGTTAGTTCTGCTTGTTTCTATAACGTAAC 356225 24 100.0 45 ........................ TGTGAGGGATGATTATGTTGTTGATGAGATAATGATCAACGAAAG 356156 24 100.0 39 ........................ CTATCGGTTTAGCAAATCTATGTGACATTTGGGTATAAG 356093 24 100.0 39 ........................ ATGATAAGACATGAAACTCACAACATTACAGTAGTGAAA 356030 24 100.0 42 ........................ TAATGCTTTTACCATCCTTTGTTGTGATTGCCACTTCTTTAG 355964 24 100.0 42 ........................ AGAACATGTAGTCTTTTTACATATTTTCTAATATAAAAATAC 355898 24 95.8 42 ........G............... AAAAACATGGTATATGAAACATAATTCGGCAGAGGCTGACGA 355832 24 100.0 40 ........................ TAAAGTGAACCTGGTAAAGTTCCACCAGGCTGTGGTAATG 355768 24 100.0 42 ........................ CATTGAATATATCCAGTTCTAAATCTAGACTCATCAGCCTCA 355702 24 100.0 40 ........................ TTTCCGGTTCCTTCAACACTTTCAGAATTTCACTCAGTCT 355638 24 100.0 44 ........................ TTAACAGAATCCGGGGGAGATCGCGGTATTCGCGGTAAACGCGG 355570 24 100.0 40 ........................ CTGTTGTATCAGGCACACTAACACAAACGCAATTCGTAAG 355506 24 100.0 39 ........................ ACGAGGGCGGCGATACCTATTTGCTCAGGATTCTGCGTA 355443 24 100.0 40 ........................ TCTGATGTTTCACCTATACTTGACGAGGCGAAAGAAAGTG 355379 24 100.0 41 ........................ CGCCAAGTCGTCGATAACATCTCTAAGAATTTTTGCCCTCA 355314 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 101 24 99.9 41 GCTAATCTACTATAGAATTGAAAG # Left flank : TCAGACATGGACAAGCCTAGATATCTTCTGGGTTTTATTGGAGGCATATGATAATTCCAACCCCTTAGTTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACCTGTCTAATTATCTGCGACCTCACATTATACATTATGCAAAAAGAATCTAAAATACACAATAATGATCCTTGTAAATTTCTTCCCGACTTTAGTAAGGATAATCTTAATAAACGACGATTTTCCTCTTGATGAAGAATAATGGAAAATATAGGGAAAGTGTTCTCCCGTATACGATCCTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGGGAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATCGAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATCAAATAGAGGGTTAAAAAACCCTCA # Right flank : TATTATGGCCTATGATTTTGACACACTTTCCTCAATTTTCCTTTCATAATCAAATTATTATATAAATTAATAAATTAAACGAGAAAACTCTTTAGTGAATTTACTGCACGTAATACGGGATATCTTTTTCCGTTGATGAGAAAAATTTAATACTTTATTTTTCGGATTTAGGGTATGATATTACTCTTAACACTTGGCTTTGATGAGAAGTTTCAATACCGTGCGTTAATGAGGCAAGGTAAGAGTATTGAAAAGGTCATTATTGTTGGGGGTTTTGAGGAAGAGAAGGCTAAGAAAGCGTTGGAATCCCTTACCAATTTCTTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAATTGACCCTAGAGACTTTGAAAATATTGTTGAGAAAGTTGGCAAGGTTATTTTAACTAATGCAGGGAAGGATTTCATGGTTAACCTAAGCGGAGGGATGAGATTAATGATTTTAGCAGTATTTTCCGCCTTTTTATTGACTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 365878-373324 **** Predicted by CRISPRDetect 2.4 *** >NC_017275.1 Sulfolobus islandicus HVE10/4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 365878 24 100.0 43 ........................ ACAACGTTGATCCAATTAATCTTGTTCGCTGCAGGAGTCGGTG 365945 24 100.0 41 ........................ TTAAATTTAATTTTAAATTCATAACCGTTAGCGTCACCATT 366010 24 100.0 40 ........................ TTTGCACTCACCGTTACGCTAGTAGTGTCATTAATAGAAT 366074 24 100.0 41 ........................ TTTTCGATTTTTTCTCGCTCTCGCGAGAACTTTTTCAATCA 366139 24 100.0 39 ........................ ATTAGCCCGTGAAGGATTCACAGTTCAACAGATAGCATT 366202 24 100.0 41 ........................ ACTCAGTGCCTGCTCCTCCAAACGCTTCCGTGCCGTAATAT 366267 24 100.0 46 ........................ AGAACTTAAAAAAATGAAGAGATAAAAAGATAAATATGTCATAACT 366337 24 100.0 38 ........................ ATCACGCCTTCCTCTACTTCAAGAGTAAGGAAGTCAGG 366399 24 100.0 36 ........................ GTTGTTAGGGAAAGCGCTTAGATACGATACGTTAGA 366459 24 100.0 42 ........................ AACATTTACAAACATAGTCATTACTCCAGAGTTTAACTGTGC 366525 24 100.0 40 ........................ TTAGGCGTTAACCACACCCAACCGATAATTTCGTAATCAT 366589 24 100.0 41 ........................ TTTAATTCAAAACTTCCGCCTCTACTAGTTAGTAAATATAA 366654 24 100.0 40 ........................ GTAAAACCATTTTGAAATTTTGCAATTACCAAATCATCTT 366718 24 100.0 42 ........................ TGTCTTCAAGAAGGTGCCTAAGCACCTTCTTTTTGGGGTCTT 366784 24 100.0 38 ........................ GATTAGGTATGAATTTATTGGTTACTATTAGATCTCCT 366846 24 100.0 40 ........................ AGTGCTGTCATCAAATGAAAAAAGAAGACTGACTTTATAA 366910 24 100.0 41 ........................ CATTTTGATATCTTTCCACACGAATTAGATCAGCTAGCTAA 366975 24 100.0 40 ........................ AACGAGATTGAGAAAATCGTTACTGACACAAAGCTAAGAG 367039 24 100.0 42 ........................ TTTCCGCTAAAATTTTTTAATATATAAATGTTTTTACGCCGT 367105 24 100.0 39 ........................ TCAGTCCCGCTAGAAACAATTACATAGTCCATAGCTCCA 367168 24 100.0 45 ........................ TTTAAAGCCAAATTCATGATATTACCAAATTGACTGAAATATTAT 367237 24 100.0 42 ........................ TTTTCTATCACTATTATATATTATATATTATGACAAATTTAT 367303 24 100.0 43 ........................ ATCAGTCGAGGGACGGTAAATATCACAAGGCCTATGAAATCCT 367370 24 100.0 44 ........................ CATTCAGTGTATATAGTTCCTAGTTTTCGATTCCCTATGCATAT 367438 24 100.0 42 ........................ CCTCTCTGTAAACGTAAATACTTATCAATCGATAGTTGTCTT 367504 24 100.0 41 ........................ ATCATGAGAAAAATAGTCGATACTCTCCCCCACTTAAGGAG 367569 24 100.0 42 ........................ GAAACATTTAGTAAAATAAATCCAAATGCACTTCTATTAATT 367635 24 100.0 44 ........................ TGAGACTTTACTACTGGAAACTCATAAATTCTGCCCTTGAAGTA 367703 24 100.0 41 ........................ GCTTTTCGAATATCATAGTCTGGCAAGTTTGTCGGTTCACC 367768 24 100.0 40 ........................ CAAACTCAAACAAAAAGTGAAAGCGAATATGATTTTTTAG 367832 24 100.0 42 ........................ TCCAGTACGTTATGTAAGATGAACCGGCACCGTCACCTACGA 367898 24 100.0 39 ........................ TTTTTATATCAAAGTTATAGATATAATCGCGGGCCATAT 367961 24 100.0 42 ........................ TAAGAATTTCATCTGCTTCGTGCTGAACATTAACTCATATTT 368027 24 100.0 42 ........................ TTTATTCATGTCAAATTAGGCTAGAGACCCCACTCCTTGAGG 368093 24 100.0 40 ........................ CTTAATGTCGGTGGTACAATACCGCCAAAGGCTATAGTGT 368157 24 100.0 39 ........................ GCTAAAAAACAGCTGTTCAAAGTGTGTGAGACCATCACT 368220 24 100.0 39 ........................ AATTCTATAAATTCTACACTTTCTACTGGAATTGAAAAT 368283 24 100.0 38 ........................ TCAGCTGGACGTAAAAAAGATGCTGCTATGTCTATACC 368345 24 100.0 41 ........................ AATTAGAATAATCAGTTACATCGTAATTGTCAAAATCGACG 368410 24 100.0 40 ........................ TCTAAGCTCGTTTACTGAATAATGTGTGACTATGCTTAGA 368474 24 100.0 39 ........................ TATGCCGTCCCGACGTTAGTCCCTTGCTGTCCTAAATTA 368537 24 100.0 41 ........................ GAATAGGCTATTGTTGCTTATGCTTCTTCCCTGAAGTAATA 368602 24 100.0 41 ........................ GTAAAACTAATGGGAAGGCCAGGGGTTGCGTAAATTTCCAC 368667 24 100.0 40 ........................ TATTATTTTTTCTACTCGTGCTGTTGGTACATTCTCGTTT 368731 24 100.0 41 ........................ TTCAAGTGTGTAAATTAGAGTGTTGTTGGACAGAGAAACTG 368796 24 100.0 40 ........................ TTTCAAAGGGGCTGAATTTTACGTTGACGATAATATCTAC 368860 24 100.0 43 ........................ TAACGTAATCAACTAAGCCTGGCGTCGCTATACCAGTATTAAT 368927 24 100.0 42 ........................ CATAAATTCTGCCCTTGAAGTAAATGTCATAAACTTCAATAC 368993 24 100.0 43 ........................ TTCGTCTTATTCTCTAATACATTATTATTATATATGAATACTC 369060 24 100.0 42 ........................ TCTCTCTGGCCCACCGGTGGGCCAGCGGAGGACCCGGGGGTC 369126 24 100.0 41 ........................ GTAAAATACAGTAAAATTTTGAATAACTTCGAAGAACTGCA 369191 24 100.0 40 ........................ TTTATTCCCTTTATCTTCAGAATTCTAGAAGCTATTTTAT 369255 24 100.0 39 ........................ CGTGGAGCTCCGAACCCTTCTCAAACGTCACTACGGTCA 369318 24 100.0 38 ........................ GAAGAGAGTGAAGAACTAAAGAAAAAAGGAAAAGCTGT 369380 24 100.0 42 ........................ TTTTGAGTTTTGTTAATTGTGATGACATCACGCTCAGTAATA 369446 24 100.0 43 ........................ GAGAGAAAATACCGCTAATCTCATTCACAGTACCAAAAATCAT 369513 24 100.0 37 ........................ CGCCTCACTCCGCCGTTTGCTGCACGGTAGGTGAGGT 369574 24 100.0 43 ........................ TCAGTTAATAACAGTTTTTGGATTGATGATAATGCCAAATTTC 369641 24 100.0 40 ........................ GGGCTTCCTATTAGTTATAGTGTAGGAGCAATTTCTTCAT 369705 24 100.0 38 ........................ CAAGATGCAGAAGATTTAAAATTAATTGCTGAATTCTT 369767 24 100.0 39 ........................ TAGAGCGGGATTACCGTTAAAATGAGAAAGATTAATGAA 369830 24 100.0 38 ........................ ACTTGACCCCGAGATACTCTTTTTTCTCATTAGTTGTT 369892 24 100.0 40 ........................ TGGTGTTGACGTGTGCTACCGTGATGCCGTGTTCCCTCTT 369956 24 100.0 40 ........................ CTCGGTTCACTGAGTACACAAGCTTTACTATTATTTTCGC 370020 24 100.0 39 ........................ TAATTTAACGTTATTATATCATTGTATAGGCTGATAGTG 370083 24 100.0 39 ........................ TTTGAATGATTGTGGATCTTTGTTGACTCTTTTTGATAC 370146 24 100.0 42 ........................ CTTTAGACATAGATTAAAATCGGGGGCAAAAAAATGCCCACA 370212 24 100.0 44 ........................ TAACGCTAGTAGTATCGTTTATAGAATTCCCTACCCATGCATCT 370280 24 100.0 41 ........................ ACTTCGTACCCCGCACCCTCCGCAGTCTTTATCAAATCTGT 370345 24 100.0 40 ........................ ATTTCATCTTCTGTGACCCATTCTTCCACTTCTTCTTCCT 370409 24 100.0 44 ........................ ATTTCATCTATTTCATCTTCTTTCTCTTGTTGAACATTTTCTTT 370477 24 100.0 38 ........................ AGGAATACTTTCCCGTTGACCGCGCTTATATTAACTGC 370539 24 100.0 43 ........................ TCATTGACAAAGTTTCGGGTGATAAATTAACATTAGGAATTGA 370606 24 100.0 40 ........................ CTCGTTATAATTATCGCGATCGCAATGCTGGGAATTGGTT 370670 24 100.0 41 ........................ TTCTTTGAAGTCCAGGTCCGCAAAGAATACATCAGCCTGGA 370735 24 100.0 43 ........................ TCTGTGGGTTCACTTCTATTACATTATTCGCCGTAAAGCAACA 370802 24 100.0 41 ........................ TCTAAGGTCAAAATTATAATTATGGCTAGTGCCAGTGGGGT 370867 24 100.0 41 ........................ ATTCCGAGTAAGGGGGTGAGCTGAGTGGCTAACAAGAGGAA 370932 24 100.0 42 ........................ ATTATATGTAATAGGAATAACACCAACTTTTGCTTTCGCTAA 370998 24 100.0 41 ........................ TATAAAGTCACTTTACAACAAACCTACGCATATGCATTTAG 371063 24 100.0 42 ........................ CGGGTGGCAATCGTGATTACCATTCCATTTACACCTCTATCT 371129 24 100.0 43 ........................ AACGACAGATCTTATTTTATTAGAAGAATTACGAAAACTGCTC 371196 24 95.8 45 T....................... ATTAACTGTTAAAACTGATAGCATGTACGCGGAGGTCTGCTACAG 371265 24 100.0 42 ........................ CTAAGTTGTTTAGTTTGACGTTTTCTATCGCTTGGGAATAAA 371331 24 100.0 40 ........................ ACACAAACAATAACACCGTCGAAGAGGTATCGACAAAAAC 371395 24 100.0 38 ........................ ACTTGACCCCGAGATACTCTTTTTTCTCATTAGTTGTT 371457 24 100.0 43 ........................ TTGTTTCAGTTACTAGATAATGAAGGAAAAGCATTGGAATTAG 371524 24 100.0 39 ........................ CGATAACAAAATCTTCAGGATTCATAAAATCAAAATGGT 371587 24 100.0 40 ........................ CTGGGTTAGGACTGTTTACCTGTTTTATAGCAAACCCTGA 371651 24 100.0 39 ........................ CAATGAATTCCTTTTCTGTATCAAAGACTCCCTCAGCAA 371714 24 100.0 40 ........................ CTCGATTTAAATTTGGAGTGGTGAAAGAGATGAAAATAGA 371778 24 100.0 39 ........................ ATACATCCGCGGTTGGGGTCTGTGTTATGACCCCATTCA 371841 24 100.0 37 ........................ TATTCACCCTGGCAGATATAAGAATTACCTTCAGTTA 371902 24 100.0 40 ........................ TTCAGAGCGTTGATAAATGAATAGAACACTGTATATTTCG 371966 24 100.0 41 ........................ TATCAACTTTTATTCTAGTCATGTCTCTCACCAACTTCTTC 372031 24 100.0 40 ........................ GTTTTTTAGTTCTATTACTATTTTCTTCTATATCTTCTTC 372095 24 100.0 40 ........................ ACTTCATAATTCTACGATATCCATACTGTTGATATGATTT 372159 24 100.0 39 ........................ ATTGTTTGCAATGACGCTCTTCCGTCAGCATCGTATGAA 372222 24 100.0 41 ........................ CGTGCAGTTGATGATGACTTATCAGAGGCGACGTTTGACAA 372287 24 100.0 40 ........................ TCGAAAGGTTACGAAGTAGATGAAATTGCTGAAATGTTGA 372351 24 100.0 36 ........................ TTAGGAATGCCTTTGATAACATACCCTTTGTAGTAT 372411 24 100.0 42 ........................ AGACTATAGTTATAGTTTGTGTTTGACGTAGATATCATTATC 372477 24 100.0 38 ........................ ATCTTGAGATAATCTCACTCATCGGGACACCCCTAAAT 372539 24 100.0 43 ........................ TCAGCGTCAGTACTGTACATCTTATAACGTATGACTTTTCCCA 372606 24 100.0 39 ........................ TATTTCACTAAATACTCCATGTATATCTCAACACACTCA 372669 24 100.0 38 ........................ GTAATTAGGGGGCTAAGACACGTCCATCTAACCCATTT 372731 24 100.0 39 ........................ GTGAGTGTAGATTATCTCTTCAGCAATTGCCTCAATCAG 372794 24 100.0 41 ........................ TTCGTCAAATCCCCTTGTCCTATCAATTCTTTATATTCATC 372859 24 100.0 38 ........................ CACGTAACCTGACCATACTTCTTCACTGAACTCCTGAA 372921 24 100.0 38 ........................ CAACAAAAACTCTAAATAACCCCAATTACACAATTTAA 372983 24 100.0 45 ........................ ATTCTAAAATAAGCATACATTTGGTATCGTTTTGCATCTTTCTGG 373052 24 100.0 38 ........................ TCTATCATATAGACAATGTATCTCTTTATTTTCTCTAT 373114 24 100.0 38 ........................ TCACAGATTACCGCTTTGACCTCACGTGGCGGGTTCTT 373176 24 100.0 40 ........................ TTCTAACGTTAGTTGTACAATAAATAACAGATGCAATAAA 373240 24 100.0 37 ........................ GAGCGAAGACTTACAAAAGTACATAGGGAAACTAGGA 373301 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 116 24 100.0 41 GCTAATCTACTATAGAATTGAAAG # Left flank : TACTAATTTTAATTTCAATTATTTCCGGATTAGGATAGCGAAGTCGTAGAGTTTGGATTTTTAAGTTTTCTATAGCGGCTTTAGTTCCTTCCACTATGGGACTAGGAACTACTATAAGTAATTTATCCTCCCTTTGAGCCGAAGTCTCATTAAGAAGTCTTAGAAGATAAGTTTCATTAAATCCCAAAGTTACAAAGTATGACTTCATCATTATATATGGTAATATCATAAATAAATAATTTTTGATTACTTTCGAGGAACTCTAATTACAATTTTTGTTCCCTACTATTTCCGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGGGAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATCGAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATCAAATAGAGGGTTAAAAAACCCTCA # Right flank : GGTTTACAAACAGAACGACAAGCCTAGCCTTTTACGGTAGACCCAAAATCACCTCCTTAAAAATAAATCTATAGTATAAATAAGCGTTTCAATTACATTAAATGTAAAAGTCTCTGGATTGAATAAATCAGGAAATAAAAGAATTAATAATAATCTAAACTCCTCTCTCCCCACCTCCCCCTTGAATATGGTATATAAGGAGTAGAGTACAAGGGCCAGCACGAAGATCAACGTGCGGAAAACAAACTTAGTAGAACTAGTAAATGGAAGAAAAGCCTTAATGTTCCTATAAGAGGTCTCTATGGGACCTCTTACCTTATTGTACAAATCCAACACTTCCCTCTTGGGTAGGTCTAGGTTAGTAGCCCTAGCGAAGTAAACAAGGCTCTTCTTCTTTCTCCCCACTTTTTCCTTGCTGTACACGAGAAGCCTGAACTTGACCTGCTCATCCCTCCTATGCCTCTTACTATTAGTTGTGTAATCCCCGTCAAACTCCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 740059-742089 **** Predicted by CRISPRDetect 2.4 *** >NC_017275.1 Sulfolobus islandicus HVE10/4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 740059 24 100.0 37 ........................ TGACTTTTGAAGGATGTGCGAAAATGATGCAACTGGG 740120 24 100.0 36 ........................ ATGTGTCCCTCTCTATGATAACGAAACTGGCAAGTT 740180 24 100.0 36 ........................ AACTATTGGTGAGAAAATGGAGGTAGACATAAAATT 740240 24 100.0 35 ........................ ATTTATTCTCCAAATATTGGCAACCAAACAAGTGA 740299 24 100.0 38 ........................ CAATATCTGATAAGACCCAATGAGAAGTGCGACCTATT 740361 24 100.0 39 ........................ AAGAGGAAAAAAGCACAAAGTGAAAGTAAATGAGGTGAA 740424 24 100.0 35 ........................ ATAAAAAGAATTAATATAACACCATCTGACAAACC 740483 24 100.0 36 ........................ CTTTGGCACTTCCACTAGCCCCACGCCGGGTATCTT 740543 24 100.0 34 ........................ AATACATAAGGACAGACGAGCAAGAAAGAGAAGT 740601 24 100.0 34 ........................ TTTTAGTGTGGAGATCATTTGCATCACCTAATTA 740659 24 100.0 34 ........................ ATAATATGCTAATTTCTATATTATATAATTAGCT 740717 24 100.0 35 ........................ AGTTAAGTTTTGTTTTTTTCTTCTTAATTTCTAAT 740776 24 100.0 35 ........................ ATTAGATGAAGAAATCTTTCTTCTGTTTTTAATTT 740835 24 100.0 36 ........................ CAGAAAACTGGTTTATTGATGAAATTTTTTCTATTG 740895 24 100.0 34 ........................ ATAGGCCCGTTATCTCCATTGTCACTAAGCATTT 740953 24 100.0 34 ........................ ATTAGGAACAAAAAGAAATTGAAAAAAATATTAG 741011 24 100.0 37 ........................ AATTATTCATATATTCTATAGTTAATGGCAATCCAGA 741072 24 100.0 35 ........................ ATTTATTCTCCAAATATTGGCAACCAAACAAGTGA 741131 24 100.0 33 ........................ TACGTAAAATATCTTAATAAGTGATCGAAAATG 741188 24 100.0 37 ........................ CTTAGTTTGGGTTCAGGATACCTGAAGATTTCTTTAT 741249 24 100.0 36 ........................ ACAGCTTCTTCTTCAGTACCAGTTTCCGTTAAAGTT 741309 24 100.0 36 ........................ ATAGAAGACCTCCTAACAGAACTGCAGACTGAATAA 741369 24 100.0 36 ........................ AGCAAATAAAGTTAAGTTTAAGATCAAAGCAAAAAG 741429 24 100.0 36 ........................ AAGAATTGCAAAACAATTATTAACAATTGTAAATTT 741489 24 100.0 37 ........................ TTTATAAGTGAGGTGTCTGGCAATCCAGCGTAGAAAA 741550 24 95.8 35 ................A....... AAGTCGTCAAAAACAACAGCATAAAACGGAAAGTT 741609 24 100.0 36 ........................ CTTCAGGAATTCCCTAAGCAGCTGCAAAGTCCTAAT 741669 24 100.0 35 ........................ GTGATACGAACTATGGTGATTAAAGAAATCTACGA 741728 24 100.0 34 ........................ ACTCTTCTATTTTTTCATCAAAAAAGTGATATTA 741786 24 100.0 35 ........................ ATGATTTTGCAAGAAGTTTTCAATTTTAGATATTA 741845 24 100.0 36 ........................ ACTCAACAGTAAAGGAAACTCATAAATCCCTCCTTT 741905 24 100.0 35 ........................ ATGATTTTGCAAGAAGTTTTCAATTTTAGATATTA 741964 24 100.0 34 ........................ GAAAGCGAGGACGATTTAATAAGCGTGATTCATA 742022 24 100.0 18 ........................ TGATCCTTCCCGCCCTCA Deletion [742064] 742064 24 79.2 0 T.............CC..G....T | A,C [742067,742070] ========== ====== ====== ====== ======================== ======================================= ================== 35 24 99.3 35 GTTTTAGTTTCTTTGTGTTGTTAC # Left flank : ATATGTTGAGTGTGGACAACAATTTCGTTCATTTGAAATTTGGTTAAAATTTCCTTAAAGTTATATCATTTAAACTCTCTGATTTACAATAAAACTTTTGAACATGGTTAAAATTACAATATTATATGTTATTAACTAACAAATCTTGTGGTGAATTGAAAATAAATTTATACTTTATACACTTTATACTGAATTAACAAAATTGTTGTCCACACTCTATATGTTCCACCGAGATCTTATATTTCCCTGATTCACCGTTATTATGTTCATAAGTAATATATAACAACGAGTAGACCAAGTAAAGGTTTAGAAATTCCGCTATTTCATATTTTATAACACTGTGCGATGACCTCGTAAATAACTCCTTCCCACGCTTGTAGACCTCAACTTCCTCAGAAAGGGGGATTCCGAACCTATAATCCACGTAACCTTTAAACAACTTCACAGCGTTGGGAGGTAACTCTGGAACTACCTCGCTATTTTTCACACTAAAGAACATA # Right flank : TAAAATTTTACTAACTTAAAACTCATTAATTTCCCCTAACTCATTTAAGGGGATCCTATTGAATATTGAAAGAAATAAGGGGAAGGAAAAAATAACTCATTTAAGGCATTGATAAAATTGATAATTATAAATAAAAATACTAAATACTCTACTGAAGAACTTTAATGCTTATTAATAATTTACACTTACTATATGATCGCATAGAAGTGAACGCTCAACGAAACGCGTAAGTAATAGAAAAATTAAAGAAGCGCCGTATTTTAGTTCTTCATTCATATTCTTCACGTAATAGCTAAAAATTAAAGAAGGAGAAGAGCAGTATCAATGAAAGACAGGGATTGTGAAGAGAGAGGCAAATTATTTATTACTTATAGAATAGATAAGAATTCCATTCAAATTTAGCCATATATCCTAATAATCTCTAACACGGTCTACAATTTCTATTCGAAATTTTTTATACTTGAATGTACTATATACTTTAGTGTTTTATAATGAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTTGTGTTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 753266-754107 **** Predicted by CRISPRDetect 2.4 *** >NC_017275.1 Sulfolobus islandicus HVE10/4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 753266 24 100.0 34 ........................ GTCATCGCTTGTCGGTGCTAAACTGAATATCTGT 753324 24 100.0 32 ........................ CCTTAGAGAAACCATAGTTTAAACGATGTTTA 753380 24 100.0 35 ........................ ACTGTTTTTTGTCATGCCGAAAACTTCAATTAATT 753439 24 100.0 36 ........................ AACCCTACCGGGTCTTTTTACGGCATTATTGATCCA 753499 24 100.0 37 ........................ TCTTTGCTAAGTAAAGAGCTGATAGGAGCGAACGTTT 753560 24 100.0 39 ........................ AGGTTTAGCTTTTCTTGTTTCGCTAAAAAAACGAATTTT 753623 24 100.0 35 ........................ ATTCTATACTTTTCTAATTTAGAGAAAAAATTCTT 753682 24 100.0 38 ........................ ATTCTGTCAATATCGAGTTGCCCCACTTCCATTTTCTT 753744 24 100.0 37 ........................ ATCTTCTTATTTCTTTCACAACTTTCACAACTTCTAA 753805 24 100.0 35 ........................ TTTATTATGAGTAACGAAAACTTCTTTGAATCGAG 753864 24 100.0 34 ........................ ATAGACCCGTCATACCTTAGTGCTACAAATAAAT 753922 24 100.0 36 ........................ CCTTGAAATAAATATCAAAAATTTCAAACCCGTAAT 753982 24 100.0 36 ........................ AAAAACTTCTTAATTGCTTCTCTTTGTTTTTCGCCT 754042 24 79.2 18 ...............CCA....TT ATTAATTAGAAATTGAAA Deletion [754084] 754084 24 83.3 0 ...................T.GCA | ========== ====== ====== ====== ======================== ======================================= ================== 15 24 97.5 34 GTAACAACACAAAGAAACTAAAAC # Left flank : ATACTCAACCAAGTTATGATAATCAAAAAGTACATTGCTAATAAGTGAGACTAAGATGCATACATTGTAATAATGAAGAAGTCTCTAGCAAGTAGTTTAATCTCTCAACGCTCTAGAATTGATAAACATACAAATAAATCTCTGGCAATTAGTTATTGACAAAGGTTCGTTGCCAATAGAGTACAAGCGCGTTGAACTAGAATAAACTCAGAAAAGCCTTATATGTATAAAGTTCTCTCTATTTTCTTTTTTATAATTTTAACTGCGCATTGAAGTTACTCAGCCATTTAAGAACAACAACTAAAGTCGTTTTCAATTTTTTATTTATCATTATCAATTTTATCAATGGCTTAAATGAGTTATTTTTTCCTTCCCCTTATATTCCTTCACATATTCAATAGGATCCCCTTAAATGAGTTAGGGGAAATTAATGAGTTTTAAGTTAGTAAGATTTTATAACCACTGGAAAGAAACGTATAAAATGAGGGCGGGAAGGATCA # Right flank : AGTTGTTCTACTTTTCCTTGGTAATATAAAGTTCACGGTACTATCGATAAAGTTTTTAGATTTACGTTTGGTTGATTGAAAACTGTGAAGTCCGAGAAAGAGGCACCACATGCTAGCGCCTCTAACAAACCTACGGGGATAACGAGTCCAGTGCATCCCCCACGTCGAAGTCCTTGACGTTAACTTCCTTACCCCTAGGTACTCTAAAACTCTTCTTAACAACGCCCTTGTAAACACCATCCTTTATAACGTGATAACAAATGCTGACAAGCTTTCCAGCAAGAGCACAAGTAGCTTGTTTAACACTCTTACCCCTAGCAATAAGCCTCTCATAATACCCGTTAAAAGGCTCAAGATTCCTAGCAACCCTAGCAACCAGGTAGAGAACCCTACGCAAATACTTATTACCCCTAATCATACCAGAGTGGGACTCGCTATCACCACTCTGCTTAGTTTTAGGGGCGAAACCAGCATAAGCCCTAGCAGCCTTAGAACTGGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACACAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //