Array 1 2842754-2843392 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022494.1 Salmonella enterica subsp. enterica serovar Derby strain SA20035215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2842754 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 2842815 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 2842876 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 2842937 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 2842999 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 2843060 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 2843121 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 2843182 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 2843243 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 2843304 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 2843365 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2860144-2863040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022494.1 Salmonella enterica subsp. enterica serovar Derby strain SA20035215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2860144 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 2860205 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 2860266 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 2860327 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 2860388 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 2860449 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 2860510 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 2860571 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 2860632 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 2860693 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 2860754 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 2860815 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 2860876 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 2860937 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 2860998 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 2861059 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 2861120 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 2861181 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 2861242 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 2861303 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 2861364 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 2861425 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 2861486 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 2861547 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 2861608 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 2861669 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 2861730 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 2861791 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 2861852 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 2861913 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 2861974 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2862035 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2862096 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2862157 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 2862218 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 2862279 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 2862340 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 2862401 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 2862462 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 2862523 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 2862584 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 2862645 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 2862706 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 2862767 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 2862828 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 2862889 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 2862950 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 2863011 29 96.6 0 ............T................ | A [2863038] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //