Array 1 24760-24096 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 24759 37 100.0 50 ..................................... ATGTAGAGCATAGTTTTCCTCCTTTACTTTTTTTAGTTCTCTGATCTCAT 24672 37 100.0 42 ..................................... TTGAGCTGCCCGCTCTATTTACCTGTCCTTTAGTCCCAGCGC 24593 37 100.0 43 ..................................... TGGCTCCGTCTGGTTTTAGTGAAACATGCAACACCAGAAAACC 24513 37 100.0 36 ..................................... TCCCGAGCCCGGTCAATATGCACGGTGCATATGACC 24440 37 100.0 41 ..................................... ATAAAACGATAAGAACGAATCGGGCGAAAATCTCTGAAAAA 24362 37 100.0 36 ..................................... GCAGAATGTAGGGGCCGACTTCGATATGACTGTCCA 24289 37 100.0 42 ..................................... GCTGATGAGGGTCACTTCTGTTTCGGTCGGCTGCAGGACGAT 24210 37 100.0 41 ..................................... AGACGTAGACTTCACATTCGAAGTCTTCGTCATAATACCTG 24132 37 97.3 0 .................................A... | ========== ====== ====== ====== ===================================== ================================================== ================== 9 37 99.7 42 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : AGTTGGAGTGGCCCTGGTCGGCAACCGAAGCGGCGGCTACTACCGAAGAGGAGACCGCCGAGGATGAATCGGACCTGTGGGTGGATCAGATCGGACCCAATAGTCAGGATATTATCGCCGAGGTGGTGGATAACAGTCGTGCACCGTTTACGATTCGCATTTTTGTGCGCGGACTTGAAAATGAAAGATTCCCCTGTGGAGGGGCCAGCCATAGAGCGATCGAGGTGGGGCAGCGTATTCGGGTCAAGGTGTCTCAGTGGAACAAAAAAGCCGGACGTCCCACCATGTTTTCCGTACAGAGCATCCGGGTTTAGCCTGACAGTACGTTGCTTTCTTGAAACTGATACCATATAATAAAGTAGAGAGCGAAGAGGTGTGACACGGAATTGTCACAGGGGTTTAAAGGCAAATTTCGTTCCGTTTTTTGGCGTTCTGTGCGCGAAAAAATCGGCCTGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : GGGTATTTCATGCGGGCGGAGTATTCTTGCGCTTAGCTGCGTGTCTGCTTTTGTCCAGCAGCTCGCTTTCGCTGCTTTGAGCTAATGCGCCGGAATCAATTCGCCACCTGCGCGGCTGCGGGCAATTGCAGGCGGTGATGGACGCCGTCTGGTCGGTTGCCAGTCCTGAACGCTTTGAAGGATGAGAAAGGGAAGACGGAAAAAGCTCTTTTTCTGAATCTCGACTTCCCGATTGGAAGGAAGGCCACGTTCGCCCCGGGTGCGGGATGTGATTGAAATGGCCACCTTGTGTAAGGACGATATATCGCAGACTGCGCTGTGTTTTACACAAGGGTCGCTGCTTGATGTCCTCTGCGTTGCTTCATCTCATCAGATAGTGCTGAGGCGCCGGTGGAAGTCAGGCGGCGGATCGCCCTCGGGGCGCACGCACATCAAACAGGACAACAGAGACAGCCTGCCGGGTGGGGGCATCGACATATCGTCCTGACTCCTCGGGACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 33117-32202 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 33116 37 100.0 46 ..................................... TCAATAGCCCTGTGCTGGGACTGAGCGCTCACGACGAAGATGTGTC 33033 37 100.0 44 ..................................... CCCCGTTCCCATAGGGCGGGGTAGCCCTTTCGAGTTTTCTCCAC 32952 37 100.0 47 ..................................... GCAGTGTCATGCTTCTCTCTCATTTTAACCGCCACAGAAACATACAG 32868 37 100.0 39 ..................................... ACACTTCGCAATTACCACGAAGCCAGCCTGATTGATTTT 32792 37 100.0 46 ..................................... CTCTCCGCCTGGAGAGCAGGTAGACTCCGGGCCGATTGCCCCTTCT 32709 37 100.0 45 ..................................... TCATCCCAGCCACCCCACTCATATCCGTCGACAGTGGGGATAATC 32627 37 100.0 42 ..................................... TTGCCGCGCCTTACGCGAGCAAAGCCCTGCTTCTGGGCCCAC 32548 37 100.0 37 ..................................... TGTTGTTGTTGTTACACACCACCAACCAGAACTTCTG 32474 37 100.0 43 ..................................... TTTGTGGGCCCGACGCCCCTTGGGCCCGTTGAACATTTCCTTC 32394 37 100.0 43 ..................................... TTTGTGGGCCCGACGCCCCTTGGGCCCGTTGAACATTTCCTTC 32314 37 100.0 39 ..................................... GCCATGATGAGCTTCACGTCGCCGTAGGTCCGCACCAGC 32238 37 94.6 0 ..................................A.T | ========== ====== ====== ====== ===================================== =============================================== ================== 12 37 99.5 43 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : GAAGGCTACAATGACTGTGCGCCACAGGATGAATCCTATCGGCCGCGTTTTTCCAGGCGCCAGTGGCCTCGCCCGAGCCGGATATAGGGACGGCCGGACGGCGTGCGGCCGATGCGCAACCCCCGGGTGCCGACGCTCAGGCCGATGCCTCGATGGCTGATGGTCAGCCGAACGGGTCCCAGGCGAAACGTCTTGTACAGATGCAGCGGCATGGCGTAAAGCGGCTGGTTGGCATGAATGCACCGGATGAACGTGCAAATACCGACCGGGATGCTTTCCAGAATTTCCGAAAAAGGGGAAGAACTTCGGCGAACGGGGGGCTTGACATTCTGATCAAAAACACGTATGCTTCGACGTGTTCAGCAGGGAAGGGGTGTGACACGGAATTGTCACAGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGTGTTCTGCGCACGCAAAAATCGGCCCGTTTGACCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : CCGCTTTAGACGAGACAATCGACAGGAAAGAGGCTTTTCGGGGGCAGCAGGACACGGTCTTGACAGGGACGTGTCGTCTTGCTTTTCTTCCCTGAAGCATCCGTAAAGCTTCTGGAGCCTGCCGCATGTCCGCAGCGCGTCGTGGCGGTCCGGTTCTGATGGCCACCCTGGGCGAGCAGCCGCAGGTGGTCACGCTCACGCTGGACCTGCTGGCGGCGCAACGCGTGACGTTCGACGAGCTGGTGCTTTTCCATACCGAGCCGCACTATCCGGCCCTTCAGCGTGCGCTCCAGCGTCTGGAAACCGAACTGGCGCAGTGGCCCGCCTATCGCGAGCTAACGGTACGGCGCGTGCTCTTCCACGACGAGGCGGGCCGACCGCTGACCGATGTGCGCGCCGATGCGGAGGCACGGCAGGTGTATCGCATCCTGTTTCGAGAGGTGCTGGAAGTCAAGCGGCAGCGGCGTCCGTTGCACTTTCTGATTGCCGGCGGCCGTAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 55604-55091 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 55603 37 97.3 46 .......A............................. CTACCTCAACTGCCTCAGTGCGATCGGTCTCTGGCATCAGAAATGT 55520 37 97.3 49 .......A............................. TTCGACGATCTCGCGGTTGGCACCGCGTCCCCGGAAAAGAAGGATGTCC 55434 37 97.3 36 .......A............................. CATGTTCGCTGGCCCATTGCTCCAGCGAGGCCAACA 55361 37 100.0 41 ..................................... TCTGTATATGGGTTGTAGTAGAGCGTTCCGCTGACCAGGCG 55283 37 100.0 44 ..................................... CTACGATTATGCGCATGGCATGCAGCAGCACCTCCGCCACCTCA 55202 37 100.0 38 ..................................... CGATCTGGACGGCCGCTAGGTATAGTCTCCGGGCCCCT 55127 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 7 37 98.8 42 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : CCCTGGCATCGACCGGGTATCGAGGGGCCGTCGAGGTCGAAACGGTCTATCGCCTATTGGAGGCGCTTGGAGACCCGGTGGGCCGTCTGTTTGCGAAACGCCGCACGTCATTGCTTGAAGCGCTGGAGCAGAGCCGTCATTCGCGTCTGATAGGGGGTAATTTTTCGATTGACGAACAGACTTATGGGGTTGTGCGCAGCCGACTTGAAGGGTTCCTCCATGAGGCGGCCCGGTTAACGGACCAGACGCTTCAGGCTCCACAACTACCACGTTCGGAAGTGCTGGACTGGGTGGGCCTCGAGTGAGTCGCTACGTCTTGACATTCCGGCACAGAACACTTATGATTCAGGAAAGAGGTATCTGAACGGCGGAGGTGTGACACGGAATTGTCACGGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCACGCGAAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : AAACGGGTGGGATATAAGCGCAAGGGGTGGCCTGCTTTCTTCTTCGGAGCCAGCAGCTGTTCAGGAAAGGCTTCGCAGCATTCAATGGGCTAAACGACTCATGCGCCTGTTCTGATTGGGTCGGATCTTCAGACTTATGCGGCAATAAGGCTTTCAGAAAAGGCTTTCATGGAGCGTTTCTGGTTTTTGTTCGCGATCGGATCCCTTGCATTTCTGATCTACCGCTATAATCAAATATGCCGAAAAAATCCAGGACTAAACCGTCAAGTTTATGCTTTTACATTAGCTTTATTTTTAATAGTTTTTATTGTAGCAAATATTTATGAATATATATGCGCGGCTCCCCTTTTTGTTATCTACTTGATTTTTCTTCTGAAAACTTTTTTCGATCATGATAAAATCCTGGCTCTTTCTGCATTGATTACTGTCGTTGCTTCTTTCAATCTTATGTTAGAAAATATTTCTGTATTCAGTTCATTTTTTCTTCTTGCATGGCTTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : GTCCGAAAACTTGACCCGATGAAAAGGGGATTACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 4 66348-65829 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 66347 37 100.0 41 ..................................... GGTATGGGTGTGGCGTCTTATACAAGTGGACGCGGTGTCCT 66269 37 100.0 47 ..................................... CGTCGAAGCGCTGGGGTGACGTCCGCCTGGCATACAGTCTCTTTGCC 66185 37 100.0 47 ..................................... CGTCGAAGCGCTGGGGTGACGTCCGCCTGGCATACAGTCTCTTTGCC 66101 37 100.0 41 ..................................... CGAGAAAGTACTCGCCGCGTGCGATCTCGAATCGTGATGTA 66023 37 100.0 40 ..................................... GGGCTCGTCGGTTATGACGTCGCTGTTCAGGTTAGGAATA 65946 37 100.0 44 ..................................... TACAGACCATAAGCCTGCCCGCCGATCTCGATGAGCCAGTTCTT 65865 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 7 37 100.0 44 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : TCCGGCGTGTCAGCCCCGGGGGTAATCATTGCCCGGCCGGAACTGTTTCGGGCTACGCAACCGCCGGATCGTGGGCGGTCTGACTCCCGGCGACGATGTGGGGATTGAAGCGCCGAGCGGGGTTTTGCGGACACACGAATCTGACCGTTGCCCGGCGTGCAGGCTTTGAGCAGCCCCGTTGCCTGCGGTGCTCAGCCGCTCCTCTGATGCTGTTCCGGTGTATGCCCGGGGCGTCAGACCATCGACTGCAGACATGGGTGGTTGACGGTCACTATCGGAGCCGTATTGTTCAGCTGGTAGTAAGGGTGCCGGCTCTTGACATTCCGCTGAGAAACACTTATGCTCCTGAAAGCGAGCAGCTGAATGGAGGGGGGTGTGACACGGAATTGTCACAGGGGTTTGAAAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCGCGCGCAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTTGGAGTGGCCCCGTAACAATGGG # Right flank : GCCACCCGGAATAGCTCCTGCTATAAGACCTCGGGGATTGAATGCTGGAGACAAATTTTGACCTGACCTTTCTGGCGTTTCTTTTTGCTAGCAGGGGCCCTGGCAGCTGGTGCTCGGTCGTGAGCTGTTGATTTTGCCTCCCGTTATTGTTTCTTTTCGGTTATAAAGGCTTTTTCCGCGGTCAACTGAAGGAGTTCTATTCTGAAATGGACCGCTACTGGTATTCGGCAGCGGCGCGTCTCGGGTTGTGGGACACTCTGCCCGAAGCGCAACAGGGGCTGGTCAATAACCTCTACAGACGACTTCGATTCTATGCCCACGCGGTCCTGGAGGGCTACGAAGCATTTGCTTTCGACAAGACGGAGTCCGAGTCTCTGAGTTCGCTTCTGGCCGTTATCGACAAACTGACGATTCGAGGGTGCCCGACGCTGGTTGATCTCGACCTGGAGACGGCCTTACTCGAAGGCCCCTGCCGCCAATTCGTCGATGCAGTCCCGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 118507-117160 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 118506 36 86.1 37 C.GG.....CT......................... ATGTTTTACCCGTGTAAAAGTATTTTGCCGTAACCCC AA [118498] 118431 36 100.0 36 .................................... GCGGGACGCATCGAGCAGATCGACTTCGGCACAGAC 118359 36 100.0 38 .................................... CGATGGCGTTGGTGCCGCCTTTAGAGAGGGGGATGATG 118285 36 100.0 37 .................................... CAGCTCAGCCGGAAGCGTCTGGCTGAGCGGAAAAATC 118212 36 100.0 35 .................................... GGGAGCGCGTGACGGTGGAGATCGCCGGGATTGAG 118141 36 100.0 37 .................................... CCCTTGGCGGTCGTGTCGTGAATCCCTGCGCGATCGT 118068 36 94.4 37 .............CT..................... GACTGAGCACGCGCACGAGCCTGCTCAGTCCGGCCAG 117995 36 94.4 35 .............CT..................... TCGCTATGCCGAGGCGGTGCGCACCAAGGACGCCA 117924 36 94.4 39 .............CT..................... GCAGGTGGCGTCGGCGAGACGTCGGACCAGCACGCGGCG 117849 36 91.7 38 ......A......CT..................... CCGGCGACGAATACATGACCGACGAATCGGCCCGCCAG 117775 36 97.2 36 ..........T......................... TTTACAGGATAAATGAAACTCCCTCCATTTACCCGT 117703 36 100.0 36 .................................... GGGTAGTTCAGCGAGAGCCCGGCGGCCGCAGGACTC 117631 36 100.0 38 .................................... CTGAAATCCTGCCGTTCGACTGGCCGGAGGACGATGTG 117557 36 100.0 34 .................................... AAGATGCCGCACTCGTCCGAGAGCGTGGCAAAAC 117487 36 97.2 38 .................A.................. ATGTTCTCCAGCTCACGAATGTCGTTCGGACTCAGCCA G [117460] 117412 36 100.0 35 .................................... GATTTTTGGCGTCATTCTGTTCCGCAGGCGTTTCG 117341 36 100.0 36 .................................... GGGTAGTTCAGCGAGAGCCCGGCGGCCGCAGGACTC 117269 36 100.0 38 .................................... GATAGTAATGTCCGCTCAGCGATAGCGGCCCCAGATAG 117195 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 97.5 37 ATTTCCGTAGCTAAATAGCTACGGCAGCATTGAAGG # Left flank : GCCGCAGGGCCCGCCGAATGGTGCGCCGCGAAAGCTGCAGGTGATGATGCCGCTCCCAGTAGTGCTGCAAAAGCCGCGTCGTCCATACCGGCGATGCGTATCCCAACGCGCGCGGGTCTTGCGCCAGGGTCTGCGCCAGCAAGGCCCGCACCGCCGCCCGCTTTTTGGCCGGACGCCCTGGATGCGGCCTGTCCGCCAACCGTTCCTTTACCGACATGCCTTCCCTTTCCTGGTACCGCTTTACCCAATTCCGTATGGTCTGACGGGTCACCCCCAGACGCTGGACCACCTCTCCGACCTGCTCGCCTGCCCTCAACCACAGCAGGGCTTGTGCCCGTTTCACAATACGGGCGTTGCGCTCCTTCTTCAGCAGCCCTTTTAAGGCCTGGCATTCCTTCTCGGTCAGGGTCACTTCCGATCGTCTGCCCATGTCTGCGGTCCTCCTGTAAGCGCACGGTTGCTTACAAGATAGCGCTCTCCGAGAATTTGTCAAAATTACT # Right flank : TGGTCGTGCTGCAGCGCCTGGATGAGCGGCTCGACGATTTCCGTAGGTCTGAAAAACTGACCCGACGAAAAGGGGATTACGACATAATCGCGAATCCGGCTTGCCTGCACGGCACCATTACGATGCCGTGCATAGTCTGAAGAATTGACCCAGAATAGGGGGTTGCGGCGGGCTTGTAGCCGTGATAACTTACTAGAAGTCTCCGAAAAATATTGTCGGAGAAGTTCGTGATTTCGATCTGTAGAGCTTTATAGCCCGCCGTTTGCAACACGACCAACGCGCTCGCTGTTAGGCACGGAGCGAAGCGAAGTGCCGTCGGGGGTGACGGCACTTTAGCGGGTGCCTTCGTGGCGTAATACAAAATACAAACCTGTGCTTCTGACGCGCGGCGCAAAACATTGGGTTGCCAGGGTTCTCCCTTTTTTCCGGATAAGTTTTAGTCATGACCCAGCAGGGACTCATTGCACAACTTCAGGCCTACTTCGGCGTGCGCGATTGGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCGTAGCTAAATAGCTACGGCAGCATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 6 122081-119724 **** Predicted by CRISPRDetect 2.4 *** >NC_013502.1 Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 122080 36 100.0 37 .................................... CAGGAATCGGTCTTGCGATGCGACGCGCGCCGAGCAG 122007 36 100.0 35 .................................... TTAAAGAAGGCTTTTCAGGGCGCTTTTTTCGCGGG 121936 36 100.0 38 .................................... CGATTGCAGGCTACACGCGCCGTTGTCAGAGCCAGCTA 121862 36 100.0 39 .................................... TTCTTCTCCTCGTCCAGCTCCAGCAGCGCCTGCGGTCTG 121787 36 100.0 38 .................................... GCCAACGGACTTCTGGCGCACTTCGCCGTGGTCGTCGA 121713 36 100.0 34 .................................... AAAGCTTTCTCCGAGGAGCCGCCGCCGCTCGACT 121643 36 100.0 37 .................................... CTCAAGCGAGGGGGCGCCTTTAAGCGCCCCCTCGCTT 121570 36 100.0 36 .................................... TCAAGCGAGGGGGCGCCTTTAAGCGCCCCCTCGCTT 121498 36 100.0 37 .................................... TAGGCCTTCCGCGTGACCAATAGTACACGCTTGCGTG 121425 36 100.0 38 .................................... TATCGTGGACGCGCTCAAAGCCAACGCGTCCACGCTCG 121351 36 100.0 37 .................................... TTGAGCCTGTGCCTCAGGAAAGGGAGAAGCCGGAGAG 121278 36 100.0 38 .................................... CTCTCAGGTGGCTCTACGAGAGCGCGACCGACCACGTC 121204 36 100.0 37 .................................... TTTACAATCGGTATGCTGAGCGGCTCAAAAACTTCGG 121131 36 100.0 38 .................................... TTCACTGTCGCAATACAGAATCGAATGCGACGAAGAAG 121057 36 100.0 37 .................................... ATGTGGGTCTGGTTCAGGGACGCTACCGCTTGTACAA 120984 36 100.0 35 .................................... CGAAGGATCCGTCGCGGTCCAGCGCCTGGTGAAAA 120913 36 100.0 38 .................................... CGCAGCCGGCGCCTTCGGATCTCTGGGCCGAGTACGGC 120839 36 100.0 35 .................................... ACGTCAGTGCCCAGGTAGTATTTCCTGCCAGCACC 120768 36 100.0 35 .................................... TGTGGGTCTGGCGTCACTACGGCGTTCCGCTTGAA 120697 36 100.0 34 .................................... CCAGCAGCGGATCTCGACCTCATCCGGGAGTTGA 120627 36 100.0 36 .................................... GCTACAAGACTAAACAATTGATCAAGCGCCACGAAG 120555 36 100.0 35 .................................... TGACAGCGTCTGAAGGCGATATGAGGCGGCACCGG 120484 36 100.0 36 .................................... GTATAAACTGCGTGCAGGCCGGACAGCGGCACCTCG 120412 36 100.0 36 .................................... TGCGCCATCGATCCGCTCCAGCGGATCGCACCCGGC 120340 36 100.0 36 .................................... ATCTGATCCAGTTCAGCGCTACTCTGAGCAAGCTGG 120268 36 100.0 38 .................................... CATGTAGCGCACGCCGTAGCGTCCGATCGATGTCGCAT 120194 36 100.0 36 .................................... GATGGAAATGGAATAAACCGGATCCCTCCACGGATC 120122 36 100.0 38 .................................... CCTCAGTTGCAGGCGGCGCCGGCGCAGCACGTCCTCCG 120048 36 100.0 35 .................................... TGTGGGTCTGGCGTCACTACGGCGTTCCGCTTGAA 119977 36 100.0 36 .................................... AGGCCTTCGCGTGTACAGAACCTTAGGGCACGCTGC 119905 36 100.0 35 .................................... GTGCTGGCGCGTGCAGGGTCTGGGCGCCGTGCTCC 119834 36 100.0 39 .................................... TTACTACCGACATTCTGAACGAACTCGCCGCCGACGGCG 119759 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 33 36 100.0 37 ATTTCCGTAGCTAAATAGCTACGGCAGCATTGAAGG # Left flank : ATACCGGTTACTACCCGATGAGGCGTTATTATCTGGTATGCTATGACATCCGGCAGTCAAAGCGACTGCAGCGTATGCACCGGCTAATGGCTGGCTATGGCGATCCGTTGCAGTATTCAGTTTTTCTGTGCCTGCTTTCCAGGGCCGAAGTTGTAACCATGCTTGACGCAATCAAGGAAGTGATCAATCAGCGGGAAGATTCGGTACTTGTGGTGGATCTCGGTAAAGTTAAAGGCGCCAGGCCGGATTGCATTCAGACGCTGGGGTGTCAGAAATTACCGGAGATGAAGAACGTTTTTCTGACGTAAGGTGTAGTTCTTTGACAGATTGCCAGAAATGCGAGCGGCGAGGTGATGTCGAAACATCCGGGGGTGCTCGCAATCATTATGTTGTATTAAACCTTTTATTTTCAGGTTCTTGATGAAAATGGGGTGATCAAGTTACTTGCAATGAATTGTACTGGATGGACAAAAAATGCCGCCACAGAGGCCATGGTAGCT # Right flank : GCTGTACGCGGTCACCTCGGTCCACCCGGAGTGAGAATTTCCGTAGCTAAGTACTCGGACATATATTATTTTCCATTTTCCTGTAACACCTTTCGGAGCCAGAACCGCTTGCTGAGCACGCCCGCCTTGCGCAGACGCTCTCGGGGGGATAGCGCCATGATATACGCACAGGCGCGTGCTACCGAGGTGTCGAGCGCCGGCACAGGCTCATTGGCCAACACATCCTGCTTCACGTGGCGCCACAAGTGATCCACGGGATTCAACTCCGGGCACGCCACCGGCAGCCAGCGCAATGCAATGCCCAATGCCCGGGCCAGGGCCTGGCTTGCACGGGCCCTGTGGGGAGAACCGCGGTCCAGAAAAAGCACGATACGCCAGCCCCGCCAGGTGCGACGAATGGCTCGCAACACCTCCTGAAACGTCCCCTGATTCCAATGCCGGGCCTGCCGCACCAGCGCCGTGCCCGTCTGCACGTTCAACACCCCGTAGAGCACCCGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCGTAGCTAAATAGCTACGGCAGCATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 539687-544167 **** Predicted by CRISPRDetect 2.4 *** >NC_013501.1 Rhodothermus marinus DSM 4252, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 539687 28 100.0 33 ............................ TAAACTAATGGTAGCATGATGTGGCTGGATATG 539748 28 100.0 33 ............................ GTACCGGGCGCCGGTTTGTAACCCTTAATGCGG 539809 28 100.0 33 ............................ TATTCGTGAAGTCTCGCGCGGATCTGGCGCTCG 539870 28 100.0 33 ............................ GTGTACGTGAATGGATCGCACGTTATAAGGGAG 539931 28 96.4 33 ...........................T CATTCTCGGGAAGTGCATTAGTGCAGCTAACGG 539992 28 100.0 33 ............................ ATTTCGATCTCTTCGGGTGTGTAGATAGTTTGG 540053 28 96.4 33 ...........................T TGCTGGAAAGCGCCGTGAAAGCGGGTAAGATCG 540114 28 96.4 33 ...........................T TCGATGCAGATCGGCTCTTTCATCTTATTCTTG 540175 28 100.0 33 ............................ TGGCGAAGATAAGAAGGTGCTCTTCGCCGAGAG 540236 28 100.0 33 ............................ CTGGCCCGCGACTACGTGCGCGTCATGGCTGCG 540297 28 100.0 33 ............................ ACTCCCTACCGTGTCAAGCCCTCACACTTCAGG 540358 28 100.0 33 ............................ TCTTCCAAAAGTTTCTATTGTGGAGCGTGTCCG 540419 28 100.0 33 ............................ CTCTGTGAGCCGCGAGGCCGACTCCCAAGGCCG 540480 28 100.0 33 ............................ GCAAGCCCAGGCGAATCTTAAAATGGCAACGGG 540541 28 100.0 33 ............................ TCGCCCGCTGGAAGACGGACCGCGGCGAATACG 540602 28 96.4 33 ...........................T CGTGTATGAGAATGCGATTTCGTCGACGAACTG 540663 28 100.0 33 ............................ TGGACGAATTTGCCCCCGGCCGTTGCATGGGCG 540724 28 100.0 33 ............................ TCGAACGGGCCTCTGCATCCTCTATAGAAAGGG 540785 28 100.0 33 ............................ TTTAGGCAAAAAATTCTGGAGGTTTCTCTTTCG 540846 28 100.0 33 ............................ CTACACGATATGGGATGCCGTAAACATCTACAG 540907 28 100.0 33 ............................ GACTCGGTCGGTCTGATTGGCCCGCCAGTCGGG 540968 28 100.0 33 ............................ GACTCGGTCGGTCTGATTGGCCCGCCAGTCGGG 541029 28 96.4 33 ...........................T CGTTGCCACAGATCTGGCGGGAATGTGCGCCAG 541090 28 100.0 33 ............................ TCCCTTGGAAATAGAGCTGAACGGCACAGCGGG 541151 28 100.0 33 ............................ ACGATCCAGTTCTACCTCGATCTTCTGGCGCTG 541212 28 100.0 33 ............................ CCTTCCGCGTAGAAACGGATCCGGTCCAGATCG 541273 28 100.0 33 ............................ CGTCCGAGGTGGCGAAGGATAAAGTGATTTGGG 541334 28 100.0 33 ............................ GTGCTGTATTACACGAAAACCAACCGCCATCTG 541395 28 100.0 33 ............................ TCGACGAGCGTGACGTACTTCGTGCCGACCAGG 541456 28 100.0 33 ............................ GTATAGACCTTGCCGTAGTGTTTTTTGCAGAAG 541517 28 96.4 33 ...........................T TGCACTAACGTTGCACTAACGATTGCACTTTGG 541578 28 100.0 33 ............................ ACATCGGGCACGCCATCAGGCCGCGTGAAGCCG 541639 28 100.0 33 ............................ CTGGGGCTTTCCAGGCTAAAGCAGTTTAAGAAG 541700 28 100.0 33 ............................ TTGATGAGCTTTTCCTGGAAGCGACCGATCAGG 541761 28 100.0 33 ............................ TCTTTCACGCCGATCAGGTGGACTCCCTCTTCG 541822 28 100.0 33 ............................ TAAACGGAGGTTTGCCATGCGCATCAACGAATG 541883 28 100.0 33 ............................ TCTGCACGTCCAGCGCCAGGCCCACCGTGTGCG 541944 28 100.0 33 ............................ CTCTCTGCTCTACCCGAAAGCTTCCGGCCCTGG 542005 28 100.0 33 ............................ CTTAGCGGTTGTGGAAAGGGTTGAAAACGTATG 542066 28 100.0 33 ............................ CGCTTCAAGCCCGACTTCGTGGGCGACGTGAAG 542127 28 100.0 33 ............................ GACCGTCTCCCCATCCTGCTGGGCCTTGTCGAG 542188 28 96.4 33 ...........................T TCGATCTCCTGGTCGCCGATCCGGATGACCTGG 542249 28 96.4 33 ...........................T TGCGCTTTGACGGACTCGGCCACCTGCACCAGG 542310 28 100.0 33 ............................ TTTCGGCGCAGCGCCAGCTGCTGACGGAAGTGG 542371 28 100.0 33 ............................ GTCACGAAGAAAGGCTCAGGAAGCAGGTCCTGG 542432 28 92.9 33 ...C.......................T TCGAATGGTGTGGTGTATAGGTACTTAGACGCG 542493 28 96.4 33 ...C........................ TATGATCGACTTATGAAAAAGTTGAACATTCGG 542554 28 96.4 33 ...C........................ TGTTGATTACGTCCGCTTCGTAAACATCGCGCG 542615 28 96.4 33 ...C........................ AGCACCCGCTCGGTCGATCCGTCCGGGCCGCCG 542676 28 96.4 33 ...C........................ GTGATCGTGCGCTCAGCCATTCTCTTGCCGCAG 542737 28 92.9 33 ...C.......................T GCCAGCGATACGCCGCAGCGACTTCGGATTGAG 542798 28 89.3 33 ...C........A..............A TGGCCGTCGATCTGGCCTACATTTACGACAAGG 542859 28 89.3 33 ...C........A..............T CCAGACCGGCAAGCCCTGGCCGTTATCAAGCTG 542920 28 92.9 33 ...C........A............... GACGGCACGACCTACGTCATTCCGAACAACGAG 542981 28 92.9 33 ...C........A............... TATGCGGAGCGCCTCTTGCCGGCCGAGACGGTG 543042 28 92.9 33 ...C........A............... TGCCGCCGGGTTTGCCGCGCCGCTCCCAGAGGG 543103 28 92.9 33 ...C........A............... TTCCAGGCGCATCACTTTTTCGGATAGATCCAG 543164 28 89.3 33 ...C........A..............G TGCCTCTTCGGCCGTGTACACGGAGCGGCAGAG 543225 28 92.9 33 ...C........A............... GATCGTAAAGCGGTAATGCTCGAGGCGTCGCAG 543286 28 92.9 33 ...C........A............... TAAGGGAAAGGGCCGCCCTTCTTTCCGAAAAGG 543347 28 92.9 33 ...C........A............... AAAGCCATGGAGCGCCCTGTGATTCGCATGCTG 543408 28 96.4 33 ...C........................ CAGCGCCAGGTTGTGGCGCCGCGCGTAGAGATG 543469 28 89.3 33 ...C........A..............T CCGGCCGCGATGCAAATGGTGCGCATCGTCCAG 543530 28 92.9 33 ...C........A............... CACGCGCTGAGGCCGTCATGGTCGAAGATGCCG 543591 28 92.9 33 ...C........A............... CCGGAAGAAAAAAGAGGCCCGAAAAAAAAAGCG 543652 28 92.9 33 ...C........A............... GAGGAGCTGGTGCGCCAGGAGGCCGTCCTGGAG 543713 28 89.3 33 ...C........A..............T TACGCCGCAGATCCCCTCTGATCTCTTTATTCG 543774 28 89.3 33 ...C........A..............T CGTTTCAAAACGGGTACGATTATCTTCGTCTGG 543835 28 89.3 33 ...C........A..............T TATCCCGTCCTCGACAAATGCCGAGGGTGGGAG 543896 28 92.9 33 ...C........A............... AGAAAAGCGCGGCCTATCGCTCATCGAAGAGCG 543957 28 89.3 33 ...C........A..............T CAGATTAGGGCCACCAATGGGGCGCTAGCTGTG 544018 28 89.3 33 ...C........A..............T TGGTGAAAATGCGGTAAAGACTGCGTGAAGAAG 544079 28 92.9 33 ...C........A............... AATACTTTCACAATACCATCGCCAGGGGCCAGG 544140 28 92.9 0 ...C........A............... | ========== ====== ====== ====== ============================ ================================= ================== 74 28 96.6 33 GTGTCCCCGCACCCGCGGGGATAGTCCC # Left flank : TACATCAAGGAACTGATCGATGGCCATGACGATCGCCGTGACCCGTAACACGCCTGGCCGCTTTCGGGGCTTTCTGGCTTCCTGCATGCTGGAAATAGCACCGGGCGTGTATGTGGCGCCCCGGATGCCCCGGGATGTGCGTGAGCGGGTCTGGCAGGTCCTGCTGTCCTGGGCCGAGTTGATTCCGCCGGATGGGGGTGTGGTGCTGCTCTGGCGCAATCGCAAAGCGCCTTCTGGCCTGGATGTGCGGCTACTGGGCTGGCCCAAAAAGGAGCTGGTGGAGTACGAAGGAGTGTGGCTGGCGTGGCGTGGGTTGACGGCGGCGCACGACGTGGAGGAGCTTGCTCGACTGGTGGAGGCCGAGGAGCCGCCGCTTGAGGCGGGAGATCCGATCCTGCGGCTGGTGGAAAGACCGGACCTGGACGAAGAGGAGGGATCGTCTCTCTAATCAATCCTTAATTGTCCTTTTTTTGCCGCGGTTATGCCATAATGGCATAGAG # Right flank : CGCGGTCGATGCGGAAAAACCTCGAGACTGGCGTCGCATCGGTCGCAAATACAGAAAAAGGCTGCTGCACATAAAGCAGCAGCCTGGTAGGTGACCCGGGTCAAGCACCGCGCTGCCCTCCCGGGTACGCCGCGCGTTTCGACGGGCGCGGCCTCCACGCGCGACGACATGGTCTTACAAGAAGTAGCTTAACAACGGTTCCATGTCTGTACGGATCATCGCCCATCTGGACGACAAAGCCTTCCAGGCGTCGGTTCGAGAGCTGCACCGGCGCGTGCGTAACCTGCGTTCGCGGTGCCTCGCATACGCGGGGATCGTTCCGTCGAAAGGTTGCCGCCGTATCGGCTGCGACTTGCAGAGAAAAGGGCTGCTGCATGTAGCGCAGCAGCCCGGAGCGTAATCCAGACGAAGCGCCGCACCGCTTCCGGATACCCCGCGGGTTCATCGGACGCGGCCTTCCCCGCAGGGCTACACATTACAGGGGACTGTCCGCAGAAGGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : GGTGCCCCCGCACACGCGGGGATAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1889770-1886875 **** Predicted by CRISPRDetect 2.4 *** >NC_013501.1 Rhodothermus marinus DSM 4252, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1889769 29 100.0 37 ............................. CCTCGGCGAGCTCGCGCGCGTCGACGAACGGCCTCTG 1889703 29 100.0 37 ............................. CCGCGGGCCACCCAAAATCTCAACACGCTTGAAATAA 1889637 29 100.0 39 ............................. CAACAAAACGGAGGACGTCATGGCTAAGATCAGCGCAAA 1889569 29 100.0 36 ............................. CTCTCAACTGCTCGACATCCCCCTCTACGCCGAAAA 1889504 29 100.0 36 ............................. CGGTAAGAAGTCTGGCAAGGCAGATAAGGCAGGTAA 1889439 29 100.0 38 ............................. CGAAGGCCAGCATGGTTCTGGTCGCTGGCGGCTGCTCG 1889372 29 100.0 38 ............................. CGCATGGCCTGCACGGTCTCGCGCAGGTCTTTGCCGTT 1889305 29 100.0 36 ............................. CGACGGATCGATGTAGCGCTCGGCGAACCCGAGTAG 1889240 29 100.0 37 ............................. CATCCGCCTGTACCGCCACTACTGCCAGCTCAATCCT 1889174 29 100.0 39 ............................. CGACAACCCAACGCCATTTGGACCGATCTATTCGCATAT 1889106 29 100.0 36 ............................. CTTTGTTTTTTTGATCGACGCGAACGGAAGTTATAG 1889041 29 100.0 39 ............................. CACTCAAATTTTGTTGGAAGCCGGCAACGATTTCGGCCG 1888973 29 100.0 38 ............................. CTTGTGAATTTGACAACGATTAGTTCATACGAAGTAAG 1888906 29 100.0 38 ............................. CCTTTGCGCATTTCCACCGGAATGCCCGCCGTTCTGAT 1888839 29 100.0 37 ............................. CGTACCGGAAAGCCGGGCGGAGACTCCGCAGATATAT 1888773 29 100.0 38 ............................. CTAATGCGTACTGTGTAGCGCATGGCGACCTCCAATGG 1888706 29 100.0 38 ............................. CTAGTCCTGCGATGAAGTACCTCGAAGTGATCCCACCG 1888639 29 100.0 38 ............................. CGGCAGAGCATGCTGCTTGCTGCAGCGTGGCTGGGCGC 1888572 29 100.0 37 ............................. TTCTGCTTATCCGCCAAGAATACGAACGCACGTTTAA 1888506 29 100.0 36 ............................. TTGTTGCGGAAACGTTGCATTTGCCGCCCGCCGACG 1888441 29 100.0 38 ............................. TTGACTTGTGAATAAGGCATTACTCAAACAGCGTTGTG 1888374 29 100.0 37 ............................. CCCTCGCAGCTATTAGTGCGGATCTCGGTGAGCTGGC 1888308 29 100.0 36 ............................. CCGTCGCGAGATTTCCTGCGTCGGAGAGGTTGGAGA 1888243 29 100.0 36 ............................. TTGTTGCGGAAACGTTGCATTTGCCGCCCGCCGACG 1888178 29 100.0 38 ............................. TTGACTTGTGAATAAGGCATTACTCAAACAGCGTTGTG 1888111 29 100.0 40 ............................. TTTAGGCGAGCGAGCGAAGACCGGTTTCATGGTGCACCTC 1888042 29 100.0 39 ............................. TGGTCGACGAATTGGCGCGCAGTATTTCGGATCTGGAAG 1887974 29 100.0 36 ............................. TTTCATGCGCGACCACTCCAGCGCCTGCTTCCAGGC 1887909 29 100.0 37 ............................. TGCGTGTTGGAGAGAATACGATGCCGGTCCTGCAGGC 1887843 29 100.0 37 ............................. TGTCCGATCGCAAGAATGGCGTACGCCGGAAGCTCAA 1887777 29 100.0 39 ............................. TTAGGTTTCGTTGCGAGAAAGGGGTTCAATCCTAAAATC 1887709 29 100.0 39 ............................. TTGGGGTCCTGCACTAACTTCATGGTGCAGGCTGGTTTG 1887641 29 100.0 37 ............................. TGGAGCTTGTCGGGCGCTTGGGCCCGGTCCCCGTATT 1887575 29 100.0 37 ............................. TGCGTGTTGGAGAGAATACGATGCCGGTCCTGCAGGC 1887509 29 100.0 39 ............................. TGCTGCTCCGCCGTCTCCACCTGCTCCGCCATCAACTCC 1887441 29 100.0 37 ............................. TTGGACGCGCACGTAGTTGACAAGATCGCCCGGGCCG 1887375 29 100.0 38 ............................. GGCGGGAGCAGATCCACTCCCGTACATCCCGTGCAATA 1887308 29 100.0 38 ............................. GGGCGCACGATATCGTATCAATATACACGTTTGTGAAA 1887241 29 100.0 39 ............................. GGCGTCTCGCGTGCAGAGATGATATATTGCCAGCCTTCT 1887173 29 100.0 36 ............................. TTTTGTTTAAAGATCAAAATCAAGCTTTGCTTTCAT 1887108 29 100.0 38 ............................. GGGAGCTTGCGAAGCGCATCGAGCTTCTGGACGGCAAG 1887041 29 96.6 39 A............................ GGCGACGTACGATGTGGGAGTGGGCGTGCTTCCGGTCTA 1886973 29 96.6 38 A............................ TGTGTTCTGATCGGTGTGGCAAGATTCGTCTCATTGCT 1886906 29 86.2 0 .........A...............CC.C | AGG [1886879] ========== ====== ====== ====== ============================= ======================================== ================== 44 29 99.5 38 GTTTTAATCGCACCTTTTTGGTATTGAAA # Left flank : CAGTACCCAGCACCAGACGCCGGCTGTAACGGACGTCGCGCAGCTCGTAAAAGATGACCACGTCTTCGTCGGGGTTCATGAGCCGGCCGGCTTCGTGCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTTGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGGGG # Right flank : ATCTCCTTCGTCGTGGCTTTTCGGTGAGGTAAACGGACTGTCTTGTGCATCCGAGGGATGTTGCATATCTTGGGCGGTTGTTCAGGTTAACCGGTTACGATCTATGAAAAGCTATCTGCTTGTGCTGCTTGTCGGGCTGTTGCTGGTCGGATGTGCCCGCGAGACACGTCCGCTGCGTCTGGCGCCCATCTTTTCGGATCATGCCGTGCTTCAGCGTCAGCAGCCGATCCGTATCTGGGGGTGGGGGGCACCGGGCGCCACCGTCACGGTGCGTCTCGATACGGTGACGGCGCAGACCGAGGTCGATGCGGAAGGGCGCTGGCTGGTCGAACTGCCCCCACAGGAGGCCGGCGGACCCTACACGCTCGCCGTCGAAAGCAACGGCGAGCGGCGCGTCGTCGAAGACGTGCTCATCGGCGAGGTCTGGGTGGCCTCCGGCCAGTCGAACATGGAGATGCCCCTGATGCCGCGTCTGGCGGGCTGGTCGCCGGGCGACTCGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 2081609-2079047 **** Predicted by CRISPRDetect 2.4 *** >NC_013501.1 Rhodothermus marinus DSM 4252, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2081608 30 100.0 38 .............................. GGGAGTCGTCTATTGTTGAGGTTTACGCTACATGGCGA 2081540 30 100.0 39 .............................. GCCGAAAGGCCGATTGTGCTGGCTCTGAGGAAGGTACTC 2081471 30 100.0 35 .............................. CTTGAAGTAGATGACACCGGCTTCATACCTCAGCC 2081406 30 100.0 36 .............................. GTTTTGATGAGGAATTGTCTTATTCCCAAACGTACG 2081340 30 100.0 39 .............................. TACGCCGGCCGAGCCGCCAGTCTTCCGCCGTAGCGAGCG 2081271 30 100.0 38 .............................. TAGCTACCTCCAACGGTTTTATTGTTAACGGATATAAC 2081203 30 100.0 37 .............................. GGCTAAGAACAAAGAACAATTGTTTAACTATGCAAAA 2081136 30 100.0 35 .............................. AGAGAAATTCATTGATACGCATGGCAAACCTCCGT 2081071 30 100.0 36 .............................. TGGCGCAAGCCCGTTTTCTTCGGCCAACACTTGTAC 2081005 30 100.0 38 .............................. ATCCGGCAGCGTCATGTGTCTGTCAATGGGAATGGCGC 2080937 30 100.0 37 .............................. GCAAAATTTAAGCTGGGAAAACGGATTGGCAGAGGCT 2080870 30 100.0 36 .............................. TATTTCACTTACAGATTTACAGTCGAACTCGGGAAC 2080804 30 100.0 36 .............................. TATATTGTCGCCAGAAGGATCACTAAAACACAAAGG 2080738 30 100.0 37 .............................. AGGCTCGGGCTCCACAGCCCCACCCTCGGCGAAGCGG 2080671 30 100.0 36 .............................. ATGCTCGTCGCATCCTCGCGCAGCACACTGGAGCGG 2080605 30 100.0 36 .............................. CTCTTGCTGACGCCGGCGCACGTTCGCACGAATCGC 2080539 30 100.0 39 .............................. GCACATTTATCCGCATTGACACGCCGGCCGGATTGCAGA 2080470 30 100.0 37 .............................. AAGGAAATACAGATAGGCGTTTCGGCCAGATTGGCGA 2080403 30 100.0 36 .............................. GCTTATACGAACTTTGTTGCAAATAACTCTTCTGAT 2080337 30 100.0 38 .............................. TAGTCTTCCGCGCCGCCTCTGCAGCATGCTCGCGGGCC 2080269 30 100.0 36 .............................. CTACATGTTCACTATCGCCAACACCGCGCTGGCTGG 2080203 30 100.0 36 .............................. CAGAAAGCGCGCGGCAGTTGGCGCAGTTGATGCACG 2080137 30 100.0 36 .............................. GGACCACTCGCGCTGCGCAGCGCGGGCAGATGTTAA 2080071 30 100.0 36 .............................. CTCCAGGATCGGAATCCGCCGCTGCAGATCCTCCAG 2080005 30 100.0 36 .............................. TACAAATCGACGGGCAGGCCCTGGCCGTTGTCCAGC 2079939 30 100.0 37 .............................. CTGGACGTGCCGCTCTTTGGCGCCATGTGCATCGAGC 2079872 30 100.0 37 .............................. GGCTGGCGTACAGCGCTTTAAATACGTGGGGCCGCCG 2079805 30 100.0 37 .............................. GCCGAAAGCCGAGACGGCCGTCTTTCGCGTGAGGATG 2079738 30 100.0 36 .............................. TGCGCGACAGTCGCGTGCTGGCGATCGGCTTTGACG 2079672 30 100.0 36 .............................. GACGGTTATTTTTATTTGTGGTTTTCTGCGTATCTT 2079606 30 100.0 36 .............................. ACAGCATCTACTCAACAGAGGTGCTGTCTATGGGCA 2079540 30 100.0 39 .............................. TCTCATAGAGAGTGTTTCGGAGAACTGTGATCAATGCTC 2079471 30 100.0 35 .............................. GTCGTCCAGGGAGGGCTTGTTGGGAGCGATGTTGA 2079406 30 100.0 37 .............................. GAGAGGGGGACATGGGTCGCAATCGCGCAGCGCCCTC 2079339 30 100.0 36 .............................. CGACGAGAGACTTCAATTGTGAACGTCCTCATTTTT 2079273 30 100.0 35 .............................. GGGAACAGGTAGCGCCTGGAAGTGCGGGCCGACTT 2079208 30 100.0 35 .............................. GCGCGATACGGCAACGCGCACGCTGCGTGTGCTTG 2079143 30 100.0 37 .............................. GCGGCGATTCCTTTGCCGAGCTCGTGCCTGAAGGTAA 2079076 30 93.3 0 ...........................G.G | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 99.8 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : TAAGATTGTATTTTTAGTTTCCACTCTACAATAAAAATGACTGACGGTAGAGGTGTCAAGCAGGGTTTTGGTGAAGAAACGAAAAAGTCGCATCGGTGGCACCGGCCGGCGCAGGGGTCAGTTGTCGGTCCGGGATGATTTGCTTCTCATGCGCTCATCTGGAAAGCCTCGATCGTGGGCAACTGAAAACAAGACCCGGGGCTTGATTCTGAGACCGGTGAAAAGAAGGACTCATGCGGGTGTAAACGCTGTTTTCCTGAAGGGAAAGGTTCGTCGTCCGGTCGTCGTCCTTCGTGATAACGAGAAGTATTCAGCAAAGATCGGGCAAGGAATTTTCGATCCCGTTGTTTTAAGATGTTGTGTTTATTTTGTTTGTGAAAAGTCGTCGGCCCCCGGGGTTTCAGAGGTAATCGGAGGTCGACGACTTCGGGGACTTGACATTCCGGTTTCAATCGCTTATAATGACCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGG # Right flank : AGGCAAAACAAAAGCCCCGTGAGCTTAAGGCTCCGGGGCTTTTCGGTCAGGTCTTCGGGACGTTCGCTGTAGACGCGGGCAGCTACTCCAGTCCCAGCACTTCCGGTCCCTGTACGAAGACGATGTCCACGGGGATGCCGGCCTGCTGGATGCGGGCCAGGTCGGCGCGCAGCGTGTCGTCCATCTGTCCGTAGCGCTCGATGAAGGCGGCCGTGGCCGCATAGTCGCCGTCGCCCTGCAGGCGAAGAATCTGTTCCGAGAGCGCCGCGACGGCCGCCTGCATGCGCTCGGGCACGACCCGGTAGGTGCCGGTAGCCGCGTCGCGCGTGAAGGCGCCCTGCTCCTTGAAGAAGTTGAACCGGATGAGGTTGGCGCGGCCGTGGGCACTGGCTGCCCCGAAGCGGATCGAACGAAAGATCCCGGCCAGGAAGGTCACGTAGTGATCCATCGGATCGGCCTCCCACTCGCCGCGGTCGATCAACCAGGTGACCATGTAGAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //