Array 1 214-779 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000111.1 Virgibacillus dokdonensis strain AK90 NODE_111_length_2360_cov_76.1053_ID_221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 214 32 96.9 34 ..........T..................... ACCTACAAAACTTTTTCTAACTCTTTAAACTTGT 280 32 96.9 35 ..........T..................... TTTTTAGTTAACATGTTGTACATGGAAAAAAGCAA 347 32 96.9 34 ..........T..................... ATTTTTATGCTCCTATTCTAATAGAGTTGTAGAA 413 32 100.0 35 ................................ TAATAATAACTAATTCGGGGAACTAGCCCTTCCCC 480 32 100.0 34 ................................ TGGATGATATTTTAACCGTCCATAATTGTCATAC 546 32 100.0 34 ................................ ATTTTTACCCTCATTTCTAATTTCTGATAAAGCG 612 32 100.0 37 ................................ TTGCTCTGTGGTTTTTACTTTATTTAACACCTCACGC 681 32 100.0 34 ................................ CGCGGCTCGCTTGTATAACCTCTGCATGTACCCT 747 32 75.0 0 ....................A.TC..AC.TCA | C [764] ========== ====== ====== ====== ================================ ===================================== ================== 9 32 96.2 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : CACAATATACTACAATAATTAATAGAAGGGCTTTTATACTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATCAAATGGGAAAATATGGATTTTATATAACAAAAAATTGCAATACAAGCCTTTACTTACTTGGTTTACACTTATAAAAACCCAATTAATTCCATTAAATTGAATTTTATAGGAAGAAATCGCAG # Right flank : ACATGTTGTATTATAAAGATATCATTTATTAAACAATTGTTGTCTAAAATGTTGGTGTAAGAATGGAAATCTATGATGTCGATCAAGCTTTTGCATTACTGAAGTAATACAAGATTACAATTAACAAAGAAAGTGTGCGCAAATGGCTCCGTACCGGTGTCATCAAAGGAATACCGCCAAAATCACGCAAAGAAGGCTGGCGAATTACAGAAGAGGATTTACAAGCGTTTATCAAAAAGCGTTTGCCAGAAGAAATACTGTTTTCTAACAAAACATATGTTACAAACGAAAAACTAAAAGAAACTTTAATAGAACAACAAGCACGGGAATTAATGTGGTGGGAACTTGTTCGACAAAATATTTTTGAAGGATTTATTGATATCAAGAAAACAAGAATGTATGAATGCGTAGAACATGCAGATCACTCGAAAAAGTTTGCCCATGAAGTATGGGATGAAGTAAAGGAACATAAAAGAGGAGCGTCTAAACCTCGTATACCG # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTTTATAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 650-1412 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000082.1 Virgibacillus dokdonensis strain AK90 NODE_82_length_10792_cov_95.4033_ID_163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 650 32 100.0 33 ................................ ATAACATAATTACTATCTGTTAAATTCGGCTCA 715 32 100.0 33 ................................ TCTTAAACGATCTAATCAAAATAAATTAGTAAC 780 32 100.0 35 ................................ GATGATATAGATACATACACAAATTATGTTACTGA 847 32 100.0 35 ................................ TAGTTTTAACATATTAATCAATCTCCTTTTGTTTT 914 32 100.0 34 ................................ GATTGGGCGAAGTAGTCACGGAAAGTGAAGTCGG 980 32 100.0 36 ................................ CGGAACACATTGAATTTAAAGCTTGTTTGGGCGGAG 1048 32 100.0 35 ................................ ATACCACGATCTACAAGTATGGCAGTAGATGCCCC 1115 32 100.0 35 ................................ AACAGAGTCTAATCTTTTTTTTAACTTTCTAAGTT 1182 32 100.0 34 ................................ ATGACGATGCAGTTATACGCTTTGTACGTCTCAT 1248 32 100.0 35 ................................ AACTACCGTATCCCCTCCGCTTAATTCCTCGTCGA 1315 32 100.0 34 ................................ GCACCGTTATACCAACGTTTTTGCCGCCAACATT 1381 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 100.0 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTATACAATAATAATCCTGCGTCTGAAGTTAGATTTCCACCATCAAAATTAACCTTGATCATTTTGTTGAAGTTAAGTGACTTTTCCGTTACACTTTTCATTATGGAGTCCTCCTTGATTTGTTTTTGTTTTGTCACTTATACAATATCAAAGGTTGGGCTCCTTTTCACTTATTTAGTGAATTACAACTTATTAATTACATATTGAATAGACGCTGTTTCTTAGGGGTTTTGGATTCAGCTATGAATAATCTAGGATCATATAATATTTTTAGATAAAATATGGTTTATTGGAGAACTTTTTTAAGAAACGAAATTAAAAATTAGGTGCGAACCCCAAGTGCACATGAAAACCCCGGGAGATTCGCACCAAAAATCACTTGCTTTTTTGGTGATTTTTATAATAAAGTTGAGAGTAACTAATCATATTTGAGATTTCTAATCTAAAAATGGACTGTTTTTGATTGTTTTTGTTAATTTTTAGGAAGAAATCGCA # Right flank : TGTATTTTTCTGCCTGCGGTTCGCCCTGATCGTAACTTGTACAACCGTGCTAAACGCACTCGTTAACCCTAGCAGACATGAAGAGTACATATGTCTAACATCCCTGTTTGTTGACTAAAAGTCTAACTTTATTCTTATTTATAACGTCATATTATTGAACGGCGACATACACAATCTATGGTGTACATGTTCATTTTCTTGTCTTGACGCGTTTTTTCTATTTTAATACGCGACTTTCTTGCTTTATTGCCCAACTTTCTCAATGCAATGCGCGTTTATCCTTACACGGATTCATTGCGCTCTTAAGCTTTACTCATTTTATTACAATACCTTTCAGATAACAGCAAAAAATAAGTGTAAAATTATAGTTCCACCATTTACACTTATTTTTATACGACCTTACTTCTCTATCTGCTTTTTAAATTCAGTCAAAACTGTTCCCGCCTCAGGACCGATAATAATTTGGATATGTTTATTATCGACTTTAACTACGCCATGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7099-6654 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000082.1 Virgibacillus dokdonensis strain AK90 NODE_82_length_10792_cov_95.4033_ID_163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 7098 32 100.0 35 ................................ TTCGGGATTGACTGAGTTTAGTGGGAATGTATCTG 7031 32 96.9 37 ..............T................. TAACAAATATTTGTGGATTGATCAAGCGGTTTTTGAG 6962 32 100.0 36 ................................ TCATTATCTGTAAAGTATTCCATAATATTTGATGTG 6894 32 100.0 37 ................................ GTGTGGAGGATATTCAAGTAATGCGTAATGATGTTAG 6825 32 100.0 38 ................................ GGTACGCAGGATCGAAAACATATGATCCATTATATTAA 6755 32 100.0 38 ................................ GTGAGGGGCAATAGGTTTCTTGGATATTTTTAAAAATT 6685 32 96.9 0 C............................... | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 99.1 37 GTATTCAATACGCGCACCATATAAGGTGCGAC # Left flank : TTACGAATTCTATCGTCTTGAGTTAGCATATATGGTCAATGTAAGCAGTGAGCAACGAGCTTCGTGCAGGTTTCACCGTTATGAACGCTTACTACTTTGCTAATGCAGCTTCCTGTTGGAATATTACAAAAAACAAGAGCTTAACCAACTTTTAAATAGGCGCAAATGAAAGATGGGATTGAAAAGATTAATACAGTAATAGAAGTAATAGTATTTATCATTGAAGTATAACAATTAGGAGCAGCACATGCAGCAGTATGCGCTTCCACCAACATTATAAGAGAAATAACAATTGCTAGAGAGCTAGGTGCATAAATAACAATTTTATATTTAATGGCCTTGACAAATAAGATGGTTAAGGCTACAACAATGCCCCCTATAAAAACTCCTTGTACTAAAGGATATAAAACAAGCATATTCATCATCCTTTCTTTATGAGTTTTTAGCTACAAACCACTTTAATTTATGGTATTGTTAACAGCATAAAAGTTGTTTATGCA # Right flank : TGCGATTCCCCCCTAAAAATTTACAAAAGCCGTATAAAAGTGCTTGTTTTAAAAGAGTAAATCAATAATAATGCTTAAATAATCGTTATTTTAATTACATAATTTTCCATAAAGTGATTAAATAGAGGTGCGAATCCCCCGGGGTTTTCATGTGCACTTCAGGTTCGCACTAAAAAATAAGCTAATTTTAATTATGCACCTCTATTATACGACAGTTTAAAATAAAGATCACTTAACTATGATAAAATTAACAAAAGAATCACTACCTAGTTAATCGTTCTTTTCTGAGATGAATTTAAAGGAGTATTTTTTCGGGTGGTAATATACTTTAGAATACTCAAAGGGCTTCCCATCTTCAAACACTGTAAAGGCTTTTAAAAATAGCAATGGTTGATTATCCTGCAATTGCAGGATTTTTTTAGCTCTTCATTAGGAAGAATTGGTATTAATTCACCGTACCTCTTGTCAATGGTGTATCCTTTATTTTCAATATAATTGTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCAATACGCGCACCATATAAGGTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 10018-10517 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000082.1 Virgibacillus dokdonensis strain AK90 NODE_82_length_10792_cov_95.4033_ID_163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10018 32 100.0 34 ................................ GGGTACATATGTTAATGGTTTGATGAGTAGTAGA 10084 32 100.0 36 ................................ GATTTGATTCCAAGTGAAGCCTAACATTTCGCCCAA 10152 32 100.0 35 ................................ AGTTTGAAGAGATTTACCTTTTCCGTATAAGGCTG 10219 32 100.0 36 ................................ GAATTTGTTATCGATCAAGCGCTAGTCGATCAAGAC 10287 32 100.0 34 ................................ AGGGTCACATATCATAATATCATCAGCAGTACGT 10353 32 100.0 35 ................................ AGAAAGGTCGGTGTGTAGACGATGGGTATCTCGGG 10420 32 100.0 34 ................................ TCCTAATTTAAAACCAACATTTGCCATTTTAACA 10486 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Left flank : TTGTAAGAACAACACGGATAACCATGCTGCTACTAAAAAGATGAACAAGTAAATGTCAAAAAATATCGTTACTGCGATTTAAATAAAATTTGGATTTTCATTATACGAATTATAGTATACATGTTCTTACTTACAAAATCAGATATATAATAAAATTGCTATAAGGAAGACACGTAAAGTCAAGAATAAGCAAATATTGCTGTTACAAAAGGGAGCTGTTTAGAAGCTAGAAACTAAAAAGTATTGTACAGTTATATTCATTGAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATACTGTTTAAGGGTATTTTTTGGTGCGAACCCCAAGTGCACATAAAAACCCCAGGGGATTCGCACCAAAATTCAGTGATTTTATGGTAATATATGTAACATAATTCCATCTACTCAGGATTATTTACGATTTTAAGCTGAAAACGTGCTGTTTTTTATTATTTTTTGTAATTTTTTAGGATGAAATCGCT # Right flank : CTCAGATAAATAATATATATTTTCACTAGCGTTGCATAAACTTTTTATAAAAAAGTCAAGAAGAATATTTTAACGCAATATTAGGAATAATAGGACATTTTGCTGTAAAAAAGTAAAAAAAACCTTATAATAAGGGAATGGTAGTCCTGTCCAAATCCCAAATTATAAGGAGCATTTCATGGACAATCATACCATAAAAACTGTATTCAAGGAATACATTCATCCATTAGATTCAAAAATTATTCAAACAATGACCGCTATTACGGGGTTAGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 214-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000107.1 Virgibacillus dokdonensis strain AK90 NODE_107_length_3396_cov_96.2463_ID_213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 214 32 100.0 36 ................................ CCCCACCACTAGCGTTATCTGCATAACGTACCCATG 282 32 100.0 35 ................................ ATCCATTGATTTATTGAGCGGTTTTAATGCATCAT 349 32 100.0 35 ................................ CGAAAAGTGCGGAAGAAATAGCGTCAGTTGCGGAA 416 32 90.6 0 ............T..........A.A...... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 97.7 36 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : CACAATATACTACAATAATTAATAGAAGGGCTTTTATACTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATCAAATGGGTAAATATGGATTTTATATAACAAAAAATTGCAATACAAACCTTTACTTACTTGATTTACACTTATAAAAACCCAATTAAATCCATAAAATTGAATTTTATAGGAAGAAATCGCTG # Right flank : TCAAGCCACTTTCCAAAATACAACCAAGCCGAACAATATAAATGTTCGGCTTGGTTAGTTCTATCAGCAATTAAAAGCGGATAAGCCTCACCTGCTGCCACATTTAAATTCCATTAAAAACCTTTTCAGGTATAATTTCATAAAAACATATTGAAACCCACACCCTATCTAAATCGTAATAAACATAAATAGAAAAGAAGATATTTCTACTGCATTTATAAACTTATTTAGAAAGCTATCTTATAAAAGACTGCAAAGGAAGGGTTTATTTTGTACAAAAACATAGAAGAACCGAAACGAAAAATTTCACCATACGCTATTAATGTATGGCGGATTACAAACACAATCGGACATACTATATTTCTCCTTATTTTAGTCGTTTTACTTATTATGGACTCCCACTTTGCTTGGTACAGCTGGATTAGTTATGTATTATGGGGCTTATTAGGTTTTACGATTATCTCTGCTGTTTGGAGTATAGTTTTTGAACCGACATTACT # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8213-8446 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000031.1 Virgibacillus dokdonensis strain AK90 NODE_31_length_40489_cov_103.068_ID_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8213 32 100.0 35 ................................ CTTGCCTTTGTAAATGCTGTATTCGATAAAGTCAG 8280 32 100.0 36 ................................ TTTTAATAGGCGACTTGTTTCTGGATCGAGCGTATT 8348 32 100.0 34 ................................ TGACCCGATCTTCGTTTTTGACTTGCTAATAGGT 8414 32 71.9 0 ......T...............AT..ATCTTC | A [8435] ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Left flank : TTAGACGAGTATCCACCATTTTTGTGGAAGTAGGGATAAAATGTTAGTATTAGTTACATATGATGTAAACACGTCAAGTAATGGTGGACAAAAGCGATTGCGAAAAGTAGCTAAAGCATGTCAAAACTATGGTCAGCGTGTTCAACATTCTGTTTTTGAATGTATTGTTGACGATACGCAATTTGCGACATTAAAAATTGAACTTAGAGAATTAATCGATGAGGAAAAAGATAGCTTGCGTTTTTATCGGTTAGGGAACAATTATAAAACGAAGGTAGAACATGTTGGGGCAAAGGAAACTATTCAATTAGAAGATCCATTAATCTTTTAGTGCGAACCCCAAGTGCACATGAAATCGCCGGGGGATTCGCACCAATAAAAGTGGAAAATATAGTTTGTTTTTAACAAAATTTAGCTGTTTTAGATGTAAATCACCTGGGTTCCCTATCATAAAAACCCATTTAATACCACAAAAAGTAATTTTATAGGAATAAATCGCA # Right flank : CCCAGCATGCATTAAACACGTCCCGTTATTTTAGGAGATGAACCATATATTTTCCATCTTATTGCTTTTTGTTAACCCCAAGGAGAATGTAAGGAATGATTGGCTGAATAAATGCTTTTCTCGATTGTTGACTGTTTGTTCGCCATTCAACAGAAACGCCATACATCCCCCAGCTTAGCATGATGGCTGTGTTTTTTAAGGCGGAACTTTCAGAAATGGAGTGCTGCTTTAATAATATGGGATAAAATATGTTCGTTAATTTATCTATAATGATACGAGATATGGTATCCTCATAGTCTGATTGGCAGCGGTGAGCCAATGAATTCCAAAAGTTAGTAATAGCAATAAAAGTACTAATAATCATATCTTCATTGACTTCTTCATAATCACTTAAATCAAAAGTGATATTTGTTATTAATCCCTCTTCTAAAGCCTGCTCCAACAGATCAAACTTATCTTCAAAATGATAATAAAAAGTAGCTCGATTAATAGTTGCTTCA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127-358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000039.1 Virgibacillus dokdonensis strain AK90 NODE_39_length_35929_cov_91.5961_ID_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 127 32 100.0 34 ................................ CTTCGCAATTTCCATCGACCTTACTAACGTCCAG 193 32 100.0 35 ................................ GGGATCGAGCATATTATCGTAGTTAATAGCCACCT 260 32 100.0 36 ................................ GATAAGTTGTCGAATCCAGTTGGATATAGTTACTTT 328 31 84.4 0 .............C.......-AC....C... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.1 35 GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Left flank : TTTTTTTATTTACAAGTATATATTATGACTGAATATTCTTTCTTATTAAAAAGACGACGAATTAAAAGACTTGACTTTCGAGAATTATTTTTATGCAACGCTAGTGATATATTTTAGAAACATTTAG # Right flank : TCATCACATAAAATCTCAATAAGCATGAAACATTGCTTGTATTTCTGATAGGTCATCCGTTAGAGTAAGTGCTAACATTAACAATATTCTAGCCTTTTGTGGTGACAAGTTATCTGCGGTTATAGAAGGAAAAGTATCAAAACTTTCAATAGGGACAACCCGTCCTTCAGAGCACCGACTACTTCTAACCACTATCATCCCTTTTTGACAGGCTTTGTTTAGCGCCTCCTCCTCTTTGGGAGAACACCTCCCCGCACCCGTCCCAGCTAACACAATTCCAGAATACTTCCCACTATCCACAATAAAATTAATAATGTCTCCGTTTACACCAGCATGTGAATACACAATAGCCACCTGAGGAAAATTAACAAATTTATTATCATTAAACACAGACTGAAAAGTATGCTTTCTAGTTGGAAGCCGATCATATAGCACGGTGTGTTCTGCGCTTACATACCCTAAAGCCCCTACTTTACCTGATTGAAATGTGTCCAAGCTAT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5827-7407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZX01000039.1 Virgibacillus dokdonensis strain AK90 NODE_39_length_35929_cov_91.5961_ID_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5827 32 100.0 36 ................................ CCATCACATATTCACCTACCTCCAATGTAATAAAGT 5895 32 100.0 35 ................................ TAATCCTTACAAATACGGTCAACCCCACAAAACAA 5962 32 100.0 36 ................................ TGGATCTTCTTCTTCGCTATCCTCGAATAATCCGAG 6030 32 100.0 38 ................................ GTATAGTTCTCGGTCGGAATATCCTGCGCTGGAAGGTC 6100 32 100.0 35 ................................ TTTAAAGACCATTAGCTTAGAGCAAGCTAAACATA 6167 32 100.0 33 ................................ TCCTCTACTGCTGTTTCGATTAATTCGTGATAA 6232 32 100.0 36 ................................ ATTGACAGAGATCTTAATCATCATAAATACAACGAT 6300 32 100.0 36 ................................ TGTGACTGGATCGACCATCTCTGGTAATCCCGCAGC 6368 32 100.0 35 ................................ AAAATGACTTGGGGAACGCTGAAAAGTTGCAGTCT 6435 32 100.0 33 ................................ TTGAGTAGTTATATTGTTAAGCTTGAAAAAACC 6500 32 100.0 33 ................................ CACGGGTCGGCTTTGCCATCACCGTTACCATCT 6565 32 100.0 38 ................................ ATTTTCTGCATTTAATCGAGCGTAATCTTTATTGCACA 6635 32 100.0 36 ................................ TGTCGTTGTGCCTACGGAGTCGTCATCCGCGTCGAA 6703 32 100.0 37 ................................ GATAACCTAGCTACGTCTGTGTTGCTGTTGTATATTT 6772 32 100.0 35 ................................ TCATTTCCGGGCAACCAAATGCTTACCTTTGTCTC 6839 32 100.0 36 ................................ GATTAACTCCGCTGTGTCACGATTAACGGAAATGTC 6907 32 100.0 34 ................................ GTCACCTAGTTTTTGACTACTCATGAAGTCGTCC 6973 32 100.0 36 ................................ TTGTTAGCACCAAACAATTTTTTTAGCTCATCTTTT 7041 32 100.0 35 ................................ GCCTCTTTGCTATGCTCATCGTTAAATTCCTCCGA 7108 32 100.0 36 ................................ TGGACTCACTATATCTGACTCTACAAAGGTAAAGCC 7176 32 100.0 34 ................................ GAAGGCATACATGCAACTTTACGGTGAAGAGGTC 7242 32 100.0 34 ................................ AATTAAAGACTACAAAGCCAGCATCACCGGAGAC 7308 32 100.0 36 ................................ CATTTTTTATTTTTTGGTTTTGATGAACTTACACCT 7376 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 24 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GGAAATAGCATTAAAAACAAGAATAAAGATGAAGTTTTAAATATTGATCCAGAATTAGAACTCTGGTACAAAGAATTACCAAGCAATGGAGAGGAGGATATGCGTCGTCTTAAAAAAATTTGGGATGTTTTTAAAGAGGAATAAAATTGGTGTCGTAAACTTTCTTCATTTTAGAGTGTATAAGAAATTTTTCTATTGGAGTTTGGTTTCAAAAAGGCGTTCAGAAATTTGCTTTATATAATACGTCAACAGATAACTAAAACTTTCATGACCGCCTTTTGTGTATTCATTAATTGTTCTAAATACAAAAATTTTTACATAATATACTTGGTGCGAACCCCAAGTGCACATAAAAAACCCAGGGGGATTCGCACCAAAATCCGCTTGCTTTTTTGATGATTTTTGTAATAATATTGAAGATAATTAGTAATATTTAAGATTTTCAACCTAAAAATGGACTGTTTTTGATTATTTTTGTTAGTTTTTAGGATAAAATCGCA # Right flank : TTGATTCCTCCATACCTATCTCAACCCCATCGCGTAGGTCGCACCTTATATAGGTGATGAAAATTACAGCTGGTATAATAGCCATTTTCGTTTAAAATAATTCAGAATTATCCACCATATCCTTTATTGAAGATGTTTGTAACTTCCCCCTATAAATTTGTAGTTGCCACTAGTAAACCAAAGTTTTTAGTGATCAAGTATTAAAAACATACCTATACATAATTTGAAAACTTGCAGGTGTTTCTTAGCCATGTATAGAAGTCTACTATAATAAAAGAGTTAAGGGGAAAGGTGAGTTTTATTATTGCGACAAGAACTATAACTGGGTTATTTAAATTTGTTTTATTAATGTGCATTTCAATGGCGAATATCAAGATTTGAAACACCAAATCGGAAAGGAACATTTTCTTTTAAGTTCAATGTTAGAGGATATCCTGACGGTGATAACGGAAAAGCCGAATTGTATCTAAGCAAGACAACGTATTCTTTAAATTCAGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //