Array 1 6693-5337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJF010000011.1 Listeria welshimeri strain FSL W9-0635 NODE_11_length_111877_cov_93.068703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6692 36 100.0 30 .................................... AAGAATGGATGCTTTACCGTGCGTTGTACT 6626 36 100.0 30 .................................... AGTCGAAGCGAAAAATTGGAAGACATCGCA 6560 36 100.0 30 .................................... CAATTACGTGCACAAATTGACGAGTCTAAC 6494 36 100.0 30 .................................... TTGAAATTATCGCAGAACGTATTTATGCCG 6428 36 100.0 30 .................................... AAGAACGAGGTGATATTGCCATTTCTTCCA 6362 36 100.0 30 .................................... ATACATGTTGGAAAAAGAATATGGTATGTA 6296 36 100.0 30 .................................... TGAAACTAAAGTTCAAACACAAGCGGGGTT 6230 36 100.0 30 .................................... TATATTGATTTTATCCTTAATTTTTGTTGG 6164 36 100.0 30 .................................... GATCATCTTGATAAAGGAAAAACGCTTCAT 6098 36 100.0 30 .................................... ATGATGACTTTCATCAATTATGATTAACGA 6032 36 100.0 30 .................................... TGACCTCGATTATTACCGTTGGATGTATCT 5966 36 100.0 30 .................................... GTGTTAATGATGCGGTTGTAGTGGGGGTGT 5900 36 100.0 30 .................................... AAATAGTCCTTAAAATACAACGGGACATCC 5834 36 100.0 30 .................................... TGGGTGAATGACGAACGATGGTGAACCCCC 5768 36 100.0 30 .................................... ATTGATGAACAATCATATTATTGATTTGAC 5702 36 100.0 30 .................................... AAGAATGAAAACTGTTGATACTGTTTTGCG 5636 36 100.0 30 .................................... TTATTTCTTCCTCTGTTTCATATTCTTGCA 5570 36 100.0 30 .................................... GCGTGGAGTTTTGTCAATGGTGTAACCTGC 5504 36 100.0 30 .................................... TAAAGCATATTAGTAAGACACAAGCGCAAT 5438 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5375 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5340,5343,5348] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //