Array 1 1250-1099 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUH01000014.1 Bifidobacterium pseudolongum subsp. globosum strain 2093B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1249 29 96.6 32 ............................C TCAACACTCCGCAGGTGCAGGTCCCAAAAGGT 1188 29 100.0 32 ............................. TCCGGCCAGCCGATGCGCTGGTACGTCATCGG 1127 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GCGGATCGATGTGCCGAACATCTGCTGGTACGAATAGGGCATGGCACCGCCAAGCAGCTGGTCAAGCATATGGGCGGTCTCATGGAACAGGTTCTGATACGGGCGGTGCACGCTGTCGCCTGCGTATATCCTTTTCAGGTCAAGGAAAATGCCTCCCTCCACGGGTGAGAAGTGCGCGGTGCCACCGAAGTGCTTGTCGATGATTAGGTAGTCCTTTGCCCGGCGCGCCCATAGGCGCGGTGTCCGGATGCTTTGACGCGTTGAGCATCTTATCGACGCGCAATGCATGCCTCTCACCGAGGGCTTTGTATAGTTCGCACCCGCGTGGGATGCGCAGTTCGGGGTCCAGAGCGGACCCGTCGGTGAAGGCATGGGGGAACCGTTCTCTCAGCCATGAGAACACGTTCCGTGAGCTTGTGCTTTCGCCGGCATCGGCGGCCATGCGTTTCGCCGATTCGTACAGGTCCTTGTACTTGTCCGGGTCATATCCCGCGAGGGTC # Right flank : CTGCTCGTAGTCCTTGAGCTTGGCCTCGTACTTCTTCTCGATCTCGGCGACGCGTTTGGCGAGCGCATGGCTGAACTCCTTGGACGCATCCGCCCCGTCGCCGTTGTGTTCGCCGTTTGGCTCCTGCTGTGGCGGATCCTTCGGTTCGGTGTCGCCCGAGCCGTCTTCGCCATTGCTGGTGATGGTGCGGTACGGGCGTGGGCTGGACTGCTGCCAGAGGTCGGGGTTGTGCAGTTTCGGCATTGCTGTTTCCTTTGCTGTGTGGTGCGCACGGTTAGCGACGCGGCGTGCGGGGTCCGCGGATACGTGGTGGATGCAGGATTCGCACCTGCGCGGCTCAATGGCGGCCGATTTACAGTCGGCTCCGGTCGGCTACTGCGGCAATCCACCGGGATGTGATAGAATGTTGAATGAAGAGGTCCCGCGATTGACACCTGATAACCTCCGCGTTTCGGAGGGGTGACATTCCTGGACCTCTTCCGTCATCGAACACGAATCAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6319-6168 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUH01000014.1 Bifidobacterium pseudolongum subsp. globosum strain 2093B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6318 29 100.0 32 ............................. AAACGGCAGCGGGTCGAGGCGACCACGAACAA 6257 29 100.0 32 ............................. ATCACGCCGGAGGCCATCGCCGCCGACAAGAA 6196 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CGCGGGGATGATCCGCACTCGCCGACGTGCGAGCGAACGGCAAAAACGCCAAACCAATGAGCCGTGCCATAAACTATGTCTTGAACAACAGAGAAAGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGCCAAGAAACACGCGAAAAGCATCATAAAGAAACGAACATAACAATGCGCACGCCAATAGATCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCGCCCTGCCGACGTGCGAACCCGGCGAAAAACCGGAACCACTACTGATCCCTGAATACCTGTTCGACACACCCAACGACGAACGGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACCGACCACGACCCGAAACCAGCCGATCATGACCAGTGAACAGGCCCTCGACCGCATCGCCCACAGCCTCGAACAGATCACCGACATCCTCAACGGCAGCACGCCACTCGAAATCACCCGAGAAAAAGCAT # Right flank : CTATGTTGAAGAACGGACCGTGGAACATGCCCCAATACACTATCAGCGCTTCAGCAAGATTCATTTTTCAACGTTGCGGTCGCGCATTTCTTCAGGGAGATACCGGGCAAAGTCACCATTGTAGGAAGTTCTACGGCCGCGTTCACTCATGACAGTTCTTTCATCACGTTATCCTGTGGGTATTCAGATGAGCGCATCATCTGGAACTTCGCCCTATGGTTTCGGCTTGTCGATATCGAGCCAGTGCTGGATGTCTTTGATGCATTCGGTCAGACTCTGGGGATACGACTCCCCAAAATGGAAGTAAGGCTTGTGGAACCGTTCCACGTACTCACGTGTCAGTTTTTGGAACAGATACAAGGTTTGTATAGTGTTTGTTACGGTAAAATCGCAGTATAAGCAGTATAAAATGATGCAAGAGCGGAACGAGCTGGAAGGAGGAATCTCGTGACGGATATCAGAGATTTCCGCAGCATTGAGGAATACCGGCAGTGGCTGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7956-7269 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUH01000014.1 Bifidobacterium pseudolongum subsp. globosum strain 2093B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 7955 29 75.9 141 ..............T.TA..A.....TGT TGACCCGATGCTAAACTGAGAGTCGGGTATTACCGCAGTGAAGAAGTTCGGAATCATGATGACGTTAGCGAAGTGTGGCCGACTGTGCAAATCGAATTTTTCGGGCATTGTTGGAGAGTGTTTTGCTAATAGAATCAGACT 7785 29 100.0 32 ............................. AAATGGAGGAACGGGAAACCCTGAAAATCACC 7724 29 100.0 32 ............................. AACAAGAAGTTTTTTTGCGCAGCGGTTACGCT 7663 29 100.0 32 ............................. GAGGGCTTCGTCACCGGCATCACCATGCAAAA 7602 29 100.0 32 ............................. CGCTCAAAGCGGCACAGGATGCGATCGCCGAC 7541 29 100.0 32 ............................. ACTTGACCCACTGCACAGCGGCTACGGTGACT 7480 29 100.0 32 ............................. GTCACCGTGCGCAACAGCCTGACAGGCGAGCG 7419 29 100.0 32 ............................. GCTCCGCGGAGGTCGGCCAGATCCCCGGACAG 7358 29 100.0 32 ............................. CGGCAATATCGGCGGGGCCGTATCGGGGCTCG 7297 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 10 29 97.2 44 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATGCAAGCGATGAGTTGGCATATGTATGGCTTGAGCGGTATGCGTTTAATGTTTCGACCGCGAACAGCGATGCGCATGCGAAGAACTATTCATTGATGCTGGGCGCCGATGGTGTGCGATTATCTCCGGTGTACGATGCTGTCGCCACCAGATTCTGGCCTGAGTTTGTGTGGGAGTACGCGATGCCGATAGATGAGGATGCTCCGTTTGCCGAACAGGTGACACCCTCCCAATGGGCTGAGCTGGCACGTAGGCATATGCTTGATGAGGAACGGGTGGTTGTTCTTGCTCGTACAATGGCCGCTCATGTGCTGACACGGGCTGAAACATTACGTGAAACACTGGCCTCGCAAGACTTCGACCGACTCATGGCATGTCTGCGTAAAGTCAACGAATCAATCGAACCCTTATTCTAGCGTTCGCGGACGAAGGACCTTCCTTTGTGGCTGCGGGTGCAGGAGGGTCCGACTGCAGTCTTGCGATTATCGATCTGCTCAAG # Right flank : CTGTTTCGAGTGGACCCGGTTCATTCAAAGAGGTCCGCGAAGCGTTGAATCTCCGGATAATCCGGATCCTTGGTCAGTTCTTTTACTGATTCTGGGATTTGTTTGAGTATCTCAGGGTTGGCGCAGGCCGTATCCAAAGCCCGCACAATCGCGAGATCAGGCTCACCGACGTCGAGGAACGACTCCATGTAATCCGCTTCGTCAGAAGACACATGTTTGATTACGTTAATGCATTGCTTGGCGATCTCAACCACTTGTCTGTTCACATCATCCATGGCGTTCGCCCCCTGTCTTCCATTTCTTCCTCTTGGAAAGCCCTACTTCTATTCTACCGTTTTCAGTGTTTCTCACTACGCCGGATCCGCCGGCGGGAAAGTTTGCCCCGCATGCGCGGGGATGATCCGGCGTTATGCAGTTCTATCATCTCATAAGCCAAGTTTGCCCCGCATGCGCGGGGATGATCCGCACTCGCCGACGTGCGAGCGAACGGCAAAAACGCC # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 17144-14309 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUH01000014.1 Bifidobacterium pseudolongum subsp. globosum strain 2093B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 17143 36 100.0 28 .................................... GAGCGTGACTGGTGTCACGAACTTCTGG 17079 36 100.0 28 .................................... ACACTCGACGAGATGCTCGCCGACGAAC 17015 36 100.0 28 .................................... ATTGATCGTAGTGGCCCGTGTGCGTCTG 16951 36 100.0 28 .................................... ATCGCGTCGCGCAAATCGGGCCGGTCGG 16887 36 100.0 28 .................................... GCTGCGGTGAGGTTGATGGGTGTGGGTG 16823 36 100.0 28 .................................... ACGCCAATGAGAATCACCATCATGCCGG 16759 36 100.0 28 .................................... ATTGGCGCCAGGATCACCGTAGACTTCC 16695 36 100.0 28 .................................... TCGATACACTCAAGGCCAAGGGCAAGAT 16631 36 100.0 28 .................................... AGCGCGAGCAGGAACTGTGGCGCCAATT 16567 36 100.0 28 .................................... TGCGCAGGCGGCGGATGGCATCGTTGTC 16503 36 100.0 28 .................................... GCACACCATGGCGGGAACTGACCGCCTC 16439 36 100.0 28 .................................... TCACGATCCTGCCCACGTGCGGCGAACC 16375 36 100.0 27 .................................... CATTGGTTCGGATGCGGTGGACATGGT 16312 36 100.0 28 .................................... GACGGAACCACATATGATTCCAGCAAGA 16248 36 100.0 28 .................................... GCATGTCCGGCATGGCGCTGGTGATGGC 16184 36 100.0 28 .................................... TTCGTCGGCTTCAAGTCCGAGAACGGCT 16120 36 100.0 28 .................................... ACGCAGATCGACGAGTGGGCGCTCCGCT 16056 36 100.0 28 .................................... AGAGGGCACGCGGATAGTAGGCCGGGTG 15992 36 100.0 28 .................................... ACCGTCATCGCCTCAAACCCGTCGGCAC 15928 36 100.0 28 .................................... ATCTACAGCGCTACGGGGCCGACGATTT 15864 36 100.0 28 .................................... GACGCGCCGGTAGTCGGTAGCGTGGGCG 15800 36 100.0 27 .................................... GCGTGGGGTTCCCTAGTATCTCCCTAG 15737 36 100.0 28 .................................... CGGCGTAGTGGAGTTGGTCGCGCATGCG 15673 36 100.0 13 .................................... GAAGAGGGCATAG Deletion [15625] 15624 36 100.0 28 .................................... CGCGACGTCGGTCAGATGGTCGGGGGAA 15560 36 100.0 28 .................................... ATTCATACTGCCGCTGCAACTGATGCAG 15496 36 100.0 28 .................................... CGAACGGTGTGGACATGGACGCCATCGA 15432 36 100.0 28 .................................... ACGCGCTCGACCTGTGCATCAAACTCGA 15368 36 100.0 28 .................................... TGGCGGAATCAAGCGTATGGGCCCGAGC 15304 36 100.0 27 .................................... ATCAGATTCGGGTTAGCGATGTGGTTT 15241 36 100.0 28 .................................... GACGCAGGTGACGGTGGACACGGATTGT 15177 36 100.0 29 .................................... TATCGACCCGGTGACCTCGTCCGCGAAAT 15112 36 100.0 28 .................................... TGCAGGAACACGGGGCGTTCCACCTTCA 15048 36 100.0 28 .................................... ACCGATCCATACGATGATGCTTCCGGCG 14984 36 100.0 28 .................................... GATGGTGATGACCCATGCGAATTGTTCA 14920 36 100.0 28 .................................... TGAAGGAGTACGGTATTCAAGGCAGGCC 14856 36 100.0 28 .................................... CCGCAAACCACTGTTCACTTCTTGTGCT 14792 36 100.0 28 .................................... GATGGTGATGACCCATGCGAATTGTTCA 14728 36 100.0 28 .................................... AGATCCCCGGCGTCACCAAGACCGAGGC 14664 36 100.0 28 .................................... CACCGCCACCAGCCGTCGATGGTTTCGA 14600 36 100.0 28 .................................... GAGCTGTCGTTCGCTACGTCGGCTGAGA 14536 36 100.0 28 .................................... GCATGGGCCGCACAGACCGGGACATGCG 14472 36 100.0 28 .................................... CGGTGTGGAACGCTCTTGTCACGTTCTT 14408 36 100.0 28 .................................... GCCAGACACCACTCGTCATCGAGACCTA 14344 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 45 36 100.0 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : CTCAGTTCAATGGAGGGCTGACAATTCCCAGTTCCATTGACGAGTTTGCACAGCAATTTGGCTTATATTGTGAGTCGAAGGAGAGGGTATTGGCAACTCCGATTTTTGGAGGATATGATGAAAAAGGATGAGGAGAGTGGGGGGATGTGGTGTTTGGTGATGTTCGATTTGCCTGTACAGACCAAGAATGAACGACGCGAGGCAACAGCGTTCAGGAATATGCTGCTTGACATGGGTTATATGATGGTACAGTTCTCCGTGTATGCGAGATACTCACCAACCCAATCGGGAAACCGATCCACGGTGAAAATGATTAAGCAGCATTTACCGTCCGGGGGGAAAGTACGGGTGGTGCATATTAGCGACCATCAATGGGCGCAATCTCTGCGTTTTGTCAACGAGGTTCCTCAAAACAATGTGGAGGCACCAGATGTCTGCACTGTTTTTTGAACATCTTTTTGGTGAAAATCGTTGGAAAACCTACCTTCTTGGCAGGCTAT # Right flank : GTGAAGAATCACGAATTTCCGGCATATAGGAACTAAAGTTATTGATTTAGACTTTCATTCGGTTGCGTTTGGGTAGCGTGTGCTGGCGTGGAATTCGTTCCAGTCGGTGCCGGTTCCGAGTGTTGGCTGGGTCATGTCGGGCTCGTTGTCTTGGTCTGTACGTGGTTTGCCCTGCCGGTCGTGTTGCTTGAGGATGCGGGCGGGGTCGGGTTTGGCGCTGTGCATGGTGCAGTGCCATTCGCAGGCGCGGCGCATGTGCGCCTCGGGCAGGCCGCGGTGGTTGACGAGCATGCACTTGAGCGCGGCGTTGAGCCCTCCCTCGAGTGTTTGTGTTCAATTGGGGATTGAGGTTTTGGTCAGGTAGTTTTTTCGGGTTTGCGCATGGGAGCATGCCGACCATCACCGTTGGGTCTGGTTGACTGGGAAGTGCTCTAATTCTTCCAGTTGAAAGGCCCGGAAAGGCAATGATCAGCATGTCCGTAGTCCACTCTATCCGTTCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //