Array 1 75326-74993 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811561.1 Aerococcus sp. HMSC061A03 Scaffold694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75325 28 100.0 33 ............................ CTTAAGAAGGAGAAATAGCGATGAGAAAACTAG 75264 28 100.0 33 ............................ TGTGCGGACTATCGTAGAGCAGTACCCTTCAGC 75203 28 100.0 33 ............................ TGTGCGGACTATCGTAGAGCAGTACCCTTCAGC 75142 28 100.0 33 ............................ CAATCGTTTGGATTCTCAAACTGCCACTCTTAC 75081 28 100.0 33 ............................ TCTTTGGGCAACTACCGCTCAACGGATAAGGTG 75020 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTTTGGCTTGATCGGTGTCATCGCGACGATGATCGACTTTGCCTTGTTAACTGCCCTCACCGAGTGGGGCCATGTCCACTACCTGCTATCAGCCGGGATTGCTTTCGTGGTCGCCACGATCTTTAATTATTTGGCCTCCATGCGCTATGTTTTCGTGAGCCGGTTTTCCAAGGAAGAGCGAATCCAGGAATTAGTCTTGTTTGTGACCTTGTCAGTTGTCGGGCTCATCCTCAACCAGGTCTTTATGTGGGCCTTCGTTGAGAAACTAGGCCTCTTCTACCTCCTAGCCAAAGTCCTTGCGACTGTCCTCGTGATGGCCTGGAACTTTATCTCCCGAAAATTGTGGATCGAATAAGACGCTAGGAAATCAGTCACTAGGCATGGCTTATCTTGGATAAAAGTGGGGAAATGCCTTATAGTAAGTGTAGGGGAAATGATAAAGTGAATGAAAACGGTCCAGGGATCGAATAAAAAATTTGATTTTATCAACTTCTTTTAGT # Right flank : TAACCAGCTAACAAAGTGTGGAAAATTTTTGCCAGCTTCTTCCCTCTTTACCGGCTATATGTATTAAATTTGACCCTGTAAGTTTAAGAAGGGAGCCCATATGTTACGAGCCTATCCTGCCTTGTTTTACTATAGTCCTGATGAAAGCAATATTCCCTTTTCAATTGTATTTCCCGATATTCCCAGAGCGATCACTCAAGGGGCGGATATTCCTGATGCGCTCTATATGGCGAGCGACTGCCTGGGCCTTCATTTAGTAGATTATTTAGATCGTGGGCAAGCTTTACCTGAGCCGACTTCAATCAATACCTTATCCTTAGAAGCCTTCTTGCCTGACGACGAGGGCTTTCGCTTTGATCCTGACCGCTCCTTTGTCTCCATGGTTTTGGTCGACCTCGATGACTACAGGAGCTAAGAGAGGATTTCTTCTCGGAAGTGAAGAGCTTTTATTTTAAAGCGGTCCAAGTTTTGATACAATAAGATTAAAATAAGTAAGTGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91124-90364 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811561.1 Aerococcus sp. HMSC061A03 Scaffold694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91123 28 96.4 33 N........................... TTATTAAGTGTTTCAATAAAAAAATACACGAAA 91062 28 100.0 33 ............................ TTCTAAGTGTGCGACTAATACTTTAGTCACTAG 91001 28 100.0 33 ............................ TCAATATATGACCTGTACGGAGAAGGCTATCGT 90940 28 100.0 33 ............................ TAGGATATGCAAAAGACGCACATCTATTGTGTG 90879 28 100.0 33 ............................ TTGCAGGCGGCACTGAATGGATAAAATATTATT 90818 28 100.0 33 ............................ CAGTTGTATCTAAATCAGAAGACAAATAAATAG 90757 28 100.0 33 ............................ CGGCTTCGGCGACTTGAATGACTACGTCAAGCA 90696 28 100.0 33 ............................ TCGTCAGCTATGGCCGGAGAGATTGAGGAGTAC 90635 28 100.0 33 ............................ CATGAAAGTGAAAAAAGGTTGGGCCGCCATGTA 90574 28 100.0 33 ............................ TACATCCGCTTTAGCAAGCGAAAGCTCATCAGC 90513 28 96.4 33 ....................A....... TGGTTTGTTGAGCTTTCCAAGTTGCCCCATGAT 90452 28 96.4 33 ...T........................ TCAAGCATTTTTCAAGATTACGAAGATCCTGTC 90391 28 75.0 0 .......T........T.....ATC.TA | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.2 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : ATGCAAGTCGTCAAATCACAAGATAACACCCAACTCGTCGAAGTCCTACCTGGTAGTATCTTTGATGATAAATAATAAATTAATCGAAGCTCCTGAGTCGCAAGCACTGAGGAGTTTTTTTGAGGGTTTTTCCTAGATAAAATGATAAGAATCATTTATAGTGATTGTAGCAAGCAAATTATTTCAAAGTGAATGAAAACGGCCGAGGGATCGAATAAGAAGCTTGATTTAATCAGCTTTTTTTAGTCTTCTTCCCGCATACGCGGGGGTGATCCTTTGGACTTGCCGACAAGCTTTTCAAGCTTGGTCTTCTTCCCGCATACGCGGGGGTGATCCTGGAGTTTCGTGATGGCCAGTGGAAGCGCTCAGCTTCTTCCCGCATACGCGGGGGTGATCCTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATAACGACCAAAAAGAAAAAGAAGCCCAATCCAACGATTAAAGCTTCTTCTGTACCAGGGGAGGTAACAGCTCCCCTCGGTACTTCTATTATAGCACATTCATAGGAGGTTCAAATTATGTCAGCAGTTACAATTGTCTTACTCGCATTATTGGTTTTAGCTACTGTTGTCGGTTTAGGATTAACCGTTTACTCAACAATTAGAGATGAAAAGAAATATGGAAGAAAATAACTTTATCTTAGTCCTGCCATTCATTATCGTCTCTAATATGGGATTTAGCATTGGGAAGAATATCGGTGCTACTCCGCTCTGATCAATCGTCTTGCCAATAGAGAATGTAAAGTTGAAAATATGACGTCAGGTTTCTTCCCGCATACGCGGGTGATCTCACAAGGCGCACAAGATCAGATACAAGTTCAAGCTTCTTCCCACGCAAGCGGGGAAGACTCCAAGAAAAGAATATCATTCAGCAATACGAGAACACGAAAAAAGAGAAATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 91377-91227 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811561.1 Aerococcus sp. HMSC061A03 Scaffold694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91376 28 100.0 33 ............................ TTTGGACTTGCCGACAAGCTTTTCAAGCTTGGT 91315 28 100.0 33 ............................ TGGAGTTTCGTGATGGCCAGTGGAAGCGCTCAG 91254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GACAGAAGGCGCCACAGTCTCAATCAACTATGCCAGCCAAGGTCAGAGCCGGGTTGAGAAAATGGAACTCACTAAGAACAGCTTAGGCGAAGGAGAGAAAGTCTTAATTATTGATGATTTCTTGAATGGTGGCGGGACAATCACAGGCATGTTGAGCATGACCAGAGAATTCAATGCGACCTGTGTGGGCATTTGTGTCCTAGCTGAAGTTCAAAACCCTGAGCGACAAGTGCCCTTCGACTACCAATCCCTCATGCAAGTCGTCAAATCACAAGATAACACCCAACTCGTCGAAGTCCTACCTGGTAGTATCTTTGATGATAAATAATAAATTAATCGAAGCTCCTGAGTCGCAAGCACTGAGGAGTTTTTTTGAGGGTTTTTCCTAGATAAAATGATAAGAATCATTTATAGTGATTGTAGCAAGCAAATTATTTCAAAGTGAATGAAAACGGCCGAGGGATCGAATAAGAAGCTTGATTTAATCAGCTTTTTTTAGT # Right flank : TTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCCCGCATACGCGGGGGTGATCCTTATTAAGTGTTTCAATAAAAAAATACACGAAACTTCTTCCCGCATACGCGGGGGTGATCCTTCTAAGTGTGCGACTAATACTTTAGTCACTAGCTTCTTCCCGCATACGCGGGGGTGATCCTCAATATATGACCTGTACGGAGAAGGCTATCGTCTTCTTCCCGCATACGCGGGGGTGATCCTAGGATATGCAAAAGACGCACATCTATTGTGTGCTTCTTCCCGCATACGCGGGGGTGATCCTTGCAGGCGGCACTGAATGGATAAAATATTATTCTTCTTCCCGCATACGCGGGGGTGATCCCAGTTGTATCTAAATCAGAAGACAAATAAATAGCTTCTTCCCGCATACGCGGGGGTGATCCCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 277-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811569.1 Aerococcus sp. HMSC061A03 Scaffold1032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 276 27 96.4 33 -........................... TTATTGACCACAAGGAAATGTTTATCGTGCGAG 216 28 100.0 33 ............................ TGGGAGCATGGTCGAATCAGCTTATCCAAAGAA 155 28 100.0 33 ............................ CCTGAGCTGCCCTTTACCTTTTTCGTACTTCTT 94 28 100.0 33 ............................ CCTAAGACGTGTTTTTGCATTTCTGTCATAGAT 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : | # Right flank : CTTATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51648-52285 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811521.1 Aerococcus sp. HMSC061A03 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51648 28 100.0 33 ............................ CAGAATTCTTCTAGCAAAATTTGGAGTCAAAGG 51709 28 100.0 33 ............................ TGCTTAGGGGAATAGACCTGAACCAAGAGTACG 51770 28 100.0 33 ............................ CTTTGTCAGTAAGACGGCGGATAGCTATCGTCC 51831 28 100.0 33 ............................ CTGGTTTCTCGTTGGTTCTTTATACAAAAGAGC 51892 28 100.0 33 ............................ CATTTCTGGCCCTGTTTCAGTATGGACAATCCA 51953 28 100.0 33 ............................ TATAAGGAGGAGCCCATGACAGAAATCATCTGC 52014 28 100.0 33 ............................ TGACAGACTTTGACCCGCTTATAGACACAGTGG 52075 28 100.0 33 ............................ CTACGTCCATTCTTACTTCGAGTCTCCAGAAGC 52136 28 85.7 33 ...........GC.A.....A....... TACTAAGTTTTCTTTGGCATATCCTTGTGTGAT 52197 28 92.9 33 ...........G..A............. CATCAAAGTAGCGCGCCACTTCTTCGCTGTGGG 52258 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : GAGCCAAATAAAGATAAAATTATCGAAATAGCAGCTATGAAGATAAAGGGACAAGAGAAAGAAGTCTTTCATCATTTAATAGCTGAGCGGACAGTTCCCATGCAGATTCAAAAACTAACGGGGATTAGCCAGCGAAAAATAGATGAAGAGGGGATAGATGAGAATGAAGTGTTAATAGATCTTCTTCAATTTATTGAAAATCAGGTTATCGTTGGATACAATATTAATTTTGACATTAGCTTTATTAATAAGCAGCTGAAAAAGATGGGTCAAGAAAATTTATCTAATCCTATCTTAGATTTAAGGACTATTGTAAAAAAAGAAAATATGTTCTTAAAAAATTATCAATTACAGACAGTCCTACTGAGTTATGGAATTGATAAAAAAGTTCCCCATCGAGCTTTGGGGGATGTCGAATTAATAGCAGAGCTAATTTCAAAAGTGAATAAATTTCCGACTTACTTGAAAAAGAAAGCCCGGTAATATAGGGATCCTTTAGT # Right flank : CTGATTTAGGATTAGGATATTATATACTATGGAAAAGAGGTGTAAAAATGAATGATTTTATTTCTGATAAAGTTGTAGCTGAAAGATTAAAAGCTTTAAGAGAAGAAAAAGGCTACACGCAAAAAGATCTAGCTAATTTAATTAGTGCAAATTATGAAACAGTTCGGGGCTGGGATTATGGTAAGTCTTTGCCTAAGCATGAAATGCTGGCAAGATTAGCAAAGCTATATAATGTAAGTATAGATTACATACTGGGCCAAACTAATACTAAAGAAAGATATAAATAAAAAAGCCCATCTAATCGATGGACTTACTTATCATTAGTAACCAGCGTCATTAAATAGTCGGTCATGCTCAAGCCGTTCTTTTTGGCCTGGTCTTGTATCAGCTGCTTTTCTTGTGCGGTAAGTCCTAGCTTTAAAGACTTATCACGCTTGCGACCAGTAGCGGGGCGACCTCTTGGGCGTTTCTTTTCTTGGGGCATTCTTGTCACTTCTTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //