Array 1 93343-96068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGKC01000012.1 Vagococcus acidifermentans strain LMG 24798 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93343 33 100.0 35 ................................. CTCCCAGCCATTTTATCACCTCCAAAAAATAACAT 93411 33 100.0 36 ................................. GACCAAGACAGCAGGACAGACTGTCTCCCTTAAAAC 93480 33 100.0 33 ................................. CGTTTGGCAAAACAAATATAGAACCTGGGTCAA 93546 33 100.0 35 ................................. ATTGCTTTAGGGATTGCAGCTAAAGCTGAGTTAGC 93614 33 100.0 32 ................................. AGCTCGATTTCTCTTTCCAACTCTTGGATTCG 93679 33 100.0 34 ................................. GCGAAAGAGCTGCGGACGAATGTACCAAAGCTAG 93746 33 100.0 34 ................................. TTTTGTCAGCAATCTGTTTGTCGGGATTAGTTAC 93813 33 100.0 34 ................................. GAAAGTGTTAGAGGTGTAGAAACATGGAATTAAA 93880 33 100.0 36 ................................. TGTGGCATACATTGTGCCATTCTCGTTGTACTCCCT 93949 33 100.0 33 ................................. AGTATAGTTTAACGAATCATTTTTCGAATCTTT 94015 33 100.0 35 ................................. AGTTTTCGGAATGAATGGCTGGAAGAACAGGGACT 94083 33 100.0 34 ................................. GTATGACCGGCCTTGGATGCACGCTTGTTTTGCC 94150 33 100.0 35 ................................. AATCAAATTAATGCTAAAATGTCAACTCTGATTGA 94218 33 100.0 35 ................................. AATCAAATTAATGCTAAAATGTCAACTCTGATTGA 94286 33 100.0 35 ................................. AAAGATACTAAAGAATATCAGACGTTAGAATTTTT 94354 33 100.0 34 ................................. CGTCAAAGCTGTTGGAAAAAAAGCGAGGTATTGG 94421 33 100.0 35 ................................. ATTGGTCATGCGCTCAATGCGTTGCGATTGATTTC 94489 33 100.0 33 ................................. AATTTTTGAGCCAAGAGGCTTTCGCTGTTGTGG 94555 33 100.0 32 ................................. TCAAACGCCCAATCAGGAAATCCTTGAAGTCT 94620 33 100.0 34 ................................. GCAACCTCGGCCAGTTCCACCGACAAAGCGACAA 94687 33 100.0 34 ................................. GGTGACCATCGTAATGCGCATTTTTTTAGTATTC 94754 33 100.0 33 ................................. AACTTAGCAGTCAATCGAAATTTTACGAATAAG 94820 33 100.0 33 ................................. TACCGTCCGACAGTTGCGACTGTGGAAATTACG 94886 33 100.0 33 ................................. TAAGACCCGATTCGTACCGCTGATGACATTTTT 94952 33 100.0 36 ................................. TCAAGGCAAACCACTTTGAGTTTGTGTCCGTAGCAT 95021 33 100.0 35 ................................. AATCCGGGGAGCAAAACGAAAATTTGTCAACACAT 95089 33 100.0 35 ................................. TTGCCGTCACCGATCGTCAATTGCACGGTCTGAGG 95157 33 100.0 35 ................................. GAATCAATAAGATGAGCTTTAAAAACTTCAAAGGC 95225 33 100.0 34 ................................. CAAAAAGGGTATGATTGATCCGGCTGATGAACCT 95292 33 100.0 34 ................................. ATAACCGAATGAAAAGGGGTGATTGCGTGGTAAC 95359 33 100.0 34 ................................. TATTCAAGTATAACAAAGAAAGCGATTAACGAAA 95426 33 100.0 35 ................................. CGCTGATGAAATGTTTATCGTCTATGACAACACCG 95494 33 100.0 35 ................................. AGCTGAAGGGGAAACTGATACTGTAGAAGGTACGG 95562 33 100.0 33 ................................. TAATGTCTTGCTATCAAATTTTGAAAGGTCAAA 95628 33 100.0 33 ................................. TGTTGTTGCGACGTGGGATGACATTGAGCAGAC 95694 33 100.0 35 ................................. TCTATCCGGCTATTATTCAATACAAAATGAAACAC 95762 33 100.0 36 ................................. ACTCATAAGAGGAAAGGCAGGTGATCCAATATCTCC 95831 33 100.0 35 ................................. TGCCAATGTCATCACCTGCCTAAATAATTTTTCTT 95899 33 100.0 36 ................................. GAAAAAGAAATGACGCAGTGGTTGAAATTCCTAAAA 95968 33 100.0 35 ................................. CTGGGATTGCGTACTTACCCTAGCATAGCCATAAG 96036 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 41 33 100.0 34 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : TGGACGAATATCCACCATTCTTATGGAAGTAGGTGACAAAAAATGCTGGTCCTGATTACGTATGATGTCGCAACGAGTTCAGCTGGCGGTACTAAAAGATTACGGAGAGTGGCGAAAAAATGTCTTGATCATGGTCAACGGGTTCAACATTCCGTTTTTGAATGTGTCTGTGATGCTGCTACATTAGCACAGTTGAAGATAGATTTAAGAAATATCATTGATGAAGAACAGGACAGTTTGCGTTTTTACATTTTAGGAAAAAACTATCGTCAGAAAATCGAGCATTTTGGTGTTAAAGAATCTTATGATGTAGAAGGAACGTTAATGTTTTAGGTGCGGATATCAAGCGAACACATTTTACCAAGGAGATTCGCACCTAAATAAGAGTTATAATTGTTAATATGCCACCTTTTTCTCAGCAGATTTTAACTTTATTGAAAAAAACAACTGAAAATTTAGACTTATTTGCTGAATTTATGCGATAAGTGTGAGTTTTCGCA # Right flank : CTGATAGTCGGTACTCAATCACCTGGCAATCTTCCGTCTGGACAGGCTACACTGGACTAGACAATAAAAATAAGGTGTGTAAACTATAATAAAACACACTGGAGGAATCAACATGTCAGAACGTAGACCGAGACGGACATTTACCAAGGAATTTAAACAGCAAATGGTGGACCTGTATCGTTCAGGTAAGCCACGATCGGAAATCATCCGAGAGTATGATTTGACCGGTTCTTCATTTGATCGTTGGGTCAGACAAGCCGATACTAGCGGCTCATTTAGCGAAAAAGATAATCGTTCGCCCAAAGAGGAAGAGCTGATCAAACTAAGAAAAGAAAATATGAAACTGAAAATGGAAAATGATATTTTAAAGCAAGCGGCGCTGATATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75229-74322 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGKC01000013.1 Vagococcus acidifermentans strain LMG 24798 13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 75228 33 100.0 36 ................................. AACACTTAGGCAATAACGCTAATATTGAAAATATTT 75159 33 100.0 33 ................................. GTCAAAGGTATCAAATGTTATCGCATTATTTAA 75093 33 100.0 34 ................................. TCCTAGTTGGACTGTTTCAAACTCTGGGCTGACA 75026 33 100.0 34 ................................. ATAGTGTAAAGTAAAAGGTTTAGCAAAAATATGT 74959 33 100.0 35 ................................. GTCCACTAATAAAAAGCAAGCAGCAGAGATTGTTA 74891 33 100.0 33 ................................. CAAGCCCCTTACTACCTCAAACTTTGGATGTGG 74825 33 100.0 33 ................................. TGCCAGAAAGTCTGCAATGCCAACTACCCTGAA 74759 33 100.0 35 ................................. CATTTCCTTGGGCAAAGTTGCCCATTGCCATGTAC 74691 33 100.0 36 ................................. AAAGGCATATTCCAGCTCTGCATGGTCAAACTGTGT 74622 33 100.0 35 ................................. CTTTTTCTCTGCCTTTTTTTCTGCAAGTGACTGCC 74554 33 100.0 33 ................................. GATGAGTTTAAAACCTGTAACAATTAAAGATTT 74488 33 100.0 34 ................................. ATGACATTAAGTAATGAGTTAATCAAACGAAAAA 74421 33 100.0 34 ................................. TTGCTTTTCGAGGCTCTGCGGAATGCCTAGTTCC 74354 33 90.9 0 .........C........CA............. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.4 34 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : TTGATAGTGAGCCCGTCTGTGATACCGTCACGGAAACGATCCTGACTTTTTAAAGCTGGGAAGCTGATCGTGAAAACTCACAGACGGGGAGGCTCGCTGTCAAGGGCAATCGGATAACATGATAAAAGGAACGACACCTTATAAATTTTGTCAAAAAAGGGGTTGCCATACC # Right flank : AGGCGTGCGAGGTACTGCTGATTGTCGTCAATCGTCACACTCTGCCTGTCCCCATCCTAACATCACAGGGATTCCACTCCCCGAGGTACAAGCGCAGCTTGATCACGAGAACTTTAAAACGCCCTTGGATATTTACGCTCATATTTTCAGAAAGCTGGGCAAAAAGACAGCTCAAACATTTAGTAACTTTATGCAAAAAAACATATCGTAGCCAAAAAAAGAAACGAGAGTTCCTGACCTGCTGCAAACATTAATACAGCAAGGTTCAGGAACTCTCCCAAAAAAGTGGACGGTAGGATTCGAACCTACACCTCTAGTTTAAGAATAAACATATTTGTCAATCCTCAGCGAGTTTTAACACCACGTTCATCCACAAAACAGACATTTTTTATCAACAAACTTTACTATAAACCATAAACTTTAAAGAAAGCATAAGCAATTATGAAGAATATTTGAACAATTATGAAAAAATAGCTATAATTCGTATCAAGTATGAAAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //