Array 1 2462100-2461600 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOQ01000002.1 Legionella pneumophila strain NCTC12181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2462099 32 100.0 34 ................................ CACTTAGTTTTTCATACTCGGTATAAAACTTTTC 2462033 32 100.0 37 ................................ GCCGTATTCGTTTGGGGGCAGATCGTCCCTGCGATAA 2461964 32 100.0 34 ................................ CCGAACGGGATGATGTCACAAAAACATGATATAA 2461898 32 100.0 36 ................................ TTTTAATAAATATTCTAACTTGTTTTCCTAACCAAT 2461830 32 100.0 35 ................................ TACTCTTATATGTATAGTCTTTTTATTGGCAGTGC 2461763 32 100.0 34 ................................ AGATGTTCGTCCGCCGCTAGGCAAGGCTCAATCG 2461697 32 100.0 34 ................................ CAAATACACTTCTTTAATTCTTCTGTGCGTCCTG 2461631 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GAGCCCAATCCACCTGCATCTGCTGTCCAGGCTCTGTTTCAAACCGAACAATAACCTCTTCTTTTTTTGACCTTAAAGTATGCATATATGCTCTTAATTGGGAGCTGCATCCATCATAACCAAACAATTTAATCTCTCGATAAATCACAGTAGCTGGTACCCAATGAGGTGTTGCATCTTTTAATCTTTTTTGAATATATGCTTTATAGGGGTCAAGCTTTAATGGCTTTTTATCACGTCTTTTGTAATAAGGCTCTGAACCACTTTTAAGATATTTTCGAACAGTATTTATCGACATACCCAATTTTCTAGCAATCGCTTTTTTACTGTATCCCTGCTTGTACAAAATATGAATCATTTTTGACTCCTCTAATTGAATCATTCCCTCCTCCAGAATTCATTCTCCTGAAGAAAACTATAGTAGGGGGATCAATTTTCAGTCGGCAAAGGGGATCAGTTTATATTCAGCAACGACATTTTGCCATAATCATCGTGTCAAA # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2465702-2464137 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOQ01000002.1 Legionella pneumophila strain NCTC12181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2465701 32 100.0 34 ................................ CATCAAGTCTAATCACCCCTCTATCACCTAGCAC 2465635 32 100.0 34 ................................ TTTCGTAAAATCATTCATCATTTAATTCTCGATT 2465569 32 100.0 35 ................................ CATTTTTATTCCTCACTTTGTTCATCGTCATAAAG 2465502 32 100.0 35 ................................ TTTGCTTTTGCTGCACAAAACGCAACATTATAAAC 2465435 32 100.0 35 ................................ ATATGTTTTCCTCGTCTATATTTTACCTTGCAAAA 2465368 32 100.0 35 ................................ GATACTGTTGCGCCATCTCCTGATTGGCTTGCATC 2465301 32 100.0 35 ................................ ATTGTTCTCTCAATATATATTATAGTACAAATTTT 2465234 32 100.0 36 ................................ AGGTATAAGAATGTGATAATAACTTACAGATCCGAT 2465166 32 100.0 36 ................................ CACTTAGGAGTGAAATGTTTTTCACAATGTTCCCAA 2465098 32 100.0 34 ................................ ATCGATACAGTTCGCTATCAAACGTTGCCACAAG 2465032 32 100.0 34 ................................ TGATGTGGATGCCTATGTTGTTCAAACGGAGGAT 2464966 32 100.0 35 ................................ ATTAACAGTTAATCTTGCAACATCAGATAAACTAT 2464899 32 100.0 35 ................................ GTTGAATATTTACTATGATACAACTGAATTCTTGG 2464832 32 100.0 35 ................................ TAATGTATATTCGTCCGGCTTTATCCCGTATTCAG 2464765 32 100.0 36 ................................ ATGCTCACCTCTTATAAGTTGAGCAATTCTATCATA 2464697 32 100.0 35 ................................ AGCCTGTAATTGCATTTGCAGTAATTGATTAGGAT 2464630 32 100.0 34 ................................ TATAATAGCGTCTATGAAAAACAACCCCAATTCA 2464564 32 100.0 35 ................................ AACGATATCGCTGGGAATTACCCGAATAATACAGT 2464497 32 100.0 34 ................................ ATTAATTAAACTAATTGTTAGTACAAAAATTAAA 2464431 32 100.0 33 ................................ GCTCATTGTATTACTGCATCTAGTTAACTCTAC 2464366 32 100.0 34 ................................ AGTTAATAGTTCAGGGTTTTCATAAATATTACTT 2464300 32 100.0 34 ................................ ATTTTTGTAAGGAATAAACACACTTCTGCAAGGT 2464234 32 100.0 34 ................................ AATCTTCTTACCTAACAATTCATAAATTCTATTT 2464168 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : TGGTTGTACAATTTTGCTGTCAATGCCGATTGAAAATTGATCCTTTTGCCAGATGAAAATTGATCCCCCCTGGTAAAAAAATTAATCAGTTATATTATTTTGCTCCTCCTTCTGATTTTGAATTAAACCGGCCTTAAATTTGTCTTTTAATCTATAACTGTCGCCTCTGCATTGAATGACATGAGCATGATGGAGCAACCTGTCGAGCATAGCTGCTGTTAATACTTTATCGCCGGCGAAAGTATTGTCCCATTGACCAAAAGCGAGATTGGAGGTGGCAATAATAGAACCTTTTTCATAGCGATTTGCAATAACTTGGAAGAAATGATTTGCCTGATCTCGGTTCATTGGTAAATATCCAATTTCATCAATAATGAGCAGTCGAGCATTATTAATAACCTGTCGCATAATATCTTTATATCGCCCTTGGCGATGAGCTGTTTCAAGCAATAACATCAAATCTGCTGCGCTAATAAATTTTGTTTTAATGTTTGCTTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //