Array 1 111277-113360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVX010000002.1 Vagococcus sp. DIV0080 scaffold5.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 111277 36 100.0 30 .................................... TTAACTATACTTACCTTCACAACATCATCT 111343 36 100.0 30 .................................... TCCTAAGCAAGAGCTAACTAAATTAGATAA 111409 36 100.0 30 .................................... TACGTTGATGAGGCTTGCAAGGTATGCGGT 111475 36 100.0 30 .................................... GAAGATTCTAAATTAACAAACAATGGTTTC 111541 36 100.0 31 .................................... CATTGTTTAAGCACTTCCAAACGCTAGTATA 111608 36 100.0 30 .................................... ATTGTAGCTATTAAAGATAGTCCTAAAGGT 111674 36 100.0 30 .................................... TTATTTCTTCAAATAGATAACTAAAGCTGT 111740 36 100.0 30 .................................... AAAAGGTTTTAGATGCCTTCGACAACGCTT 111806 36 100.0 30 .................................... TCTTTAATTATGCATATTTTAGCATAAATA 111872 36 100.0 30 .................................... TTAGGTTCTGACAGGTCTATAGCTTTATTC 111938 36 100.0 30 .................................... TCTGGAACAAGTGGAAGTTTTGTGTTAAGA 112004 36 100.0 30 .................................... AAATAAAAATATAAGGAGAAAAAACATGAA 112070 36 100.0 31 .................................... TGAAGCCTTCGGCACTCAACCCCTTTCTCTT 112137 36 100.0 30 .................................... ATAATTACCAAAGCGATTAATGCAAAGCAA 112203 36 100.0 30 .................................... GAGACCTAGTCCATTTCCTCCGCATTCACC 112269 36 100.0 30 .................................... AATCTCTTAGCTTATATATTCAACAGTCTA 112335 36 100.0 30 .................................... TCTATTCGTCTACCATAAGTAGCATCACCT 112401 36 100.0 30 .................................... AAGTAGCAGCACTAGCAGCCATTCCAGTAA 112467 36 100.0 30 .................................... ATACTAACCGTAACACTAATCAATGCAGAA 112533 36 100.0 30 .................................... TTTAACAATTAGTATTGATGGTTTTATTAT 112599 36 100.0 30 .................................... ACAAATGGCAGGACAGATTACTAGCACTGT 112665 36 100.0 30 .................................... TGACTTAAAAGGTGAGCCTGGTAAAAATGG 112731 36 100.0 30 .................................... TTCGCCATCGCCGAACCCCTCAATCCTGAT 112797 36 100.0 30 .................................... AATGTGGGGTGATGGTTTCTTAGCATGGTG 112863 36 100.0 30 .................................... TTGTTGACAGAAGGTTATGCAGTACTTAGT 112929 36 100.0 30 .................................... TCAAACGCGCGCCGATAACGTTCTAATCAT 112995 36 100.0 30 .................................... TAAATTACGATTTGCAACTGCTTCATACAA 113061 36 100.0 30 .................................... TGTTAGATGAATTAGATTAATTAAAGGAGT 113127 36 100.0 30 .................................... CGATGAAATCAATATAAAGAAACATGACAG 113193 36 100.0 30 .................................... AAAAACAAATATTTTTTAAAAGGTTATGTT 113259 36 100.0 30 .................................... CAAGGTTTTTTATTCAAAGTGTTAAATGCT 113325 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : GCCAGAAATAAAAACAAAGATCAATCAGTTAACATCAGAAATCAATGATATAATGAATCATGAATTACTTGAGCACGAAATTGATTTAGAAGAGGATGAAGAAATTACTTTTTTAGAGCTTTTTAAGGTGTTAGGAATCAAAATTGAAACCAAAAGTGATACGATTTTTGAGAGAATTATTGAAATTCTTCAGATTTATAAGTATTTGTCTCGAAAGAAACTTTTAATATTGGTTAATGTGACAGCTTATTTGACGGATACAGAGTTAAAGGAAATAGTTGATTACATCTCTTTATTACAAGTTGATGTATTATTTCTTGAACCTAGAAGTAGGCGCGCTATTAAACAATATGTAATTGATGAAGATTTTTATCTTGAATATAAATAAAAAATGTTCTTTGACAATTAAATAGTTTTAAAAAAGAAGCATTCAAAACAGGATTCTTGCTATGGATGAGTAGCGCGATTACGAAATTAAGGGCATTTTTATTTGCTACGAG # Right flank : AGAATTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 2026-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVX010000022.1 Vagococcus sp. DIV0080 scaffold5.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2025 36 100.0 30 .................................... TGCATTATCATTACTGGCTAGATAATATGA 1959 36 100.0 30 .................................... TATTACTATTTTGCATGGCGCTAAACGTTC 1893 36 100.0 30 .................................... ATCCTTCTGCTGAACACCTAGATACTATCT 1827 36 100.0 30 .................................... TTTTAGATGTGTGCTACCTAACACTACAGT 1761 36 100.0 29 .................................... GTCCCTCTGTTTCGGTTGCTGGTGCATCG 1696 36 100.0 30 .................................... CAGAATCAATTGTTGAGTTTGAAGAACCTA 1630 36 100.0 30 .................................... TAAACAAACCACATAACTATAATTGTTGTC 1564 36 100.0 30 .................................... TTCTTCTATGTTCATTTCTATATTGGCTAT 1498 36 100.0 30 .................................... CAAAAAGGTTTCCTATTCGGTCGCTTTTCC 1432 36 100.0 30 .................................... CAATGCTTCAGCTAGGTAACCAATATCAGT 1366 36 100.0 30 .................................... TAAAAACGACCAACAATTAAGTCAGTCGTT 1300 36 100.0 30 .................................... TTGAAACACGCACGTAAATTCCGACTTTCA 1234 36 100.0 30 .................................... ATAAAATAATACTTTTATTCAACAAAAAGT 1168 36 100.0 30 .................................... CTTGTCTAAAATCAAAGTCTCCTGTTTCAT 1102 36 100.0 29 .................................... CAACTGCTCCCGGGTCACCTGCACCATGA 1037 36 100.0 30 .................................... ATCGTTGTGTTGGTAATTCAACTATTTACA 971 36 100.0 30 .................................... TTATGTTCAAGTTTCTAATAACACGATTCT 905 36 100.0 30 .................................... CATTGCCTTAGAAAACCCACGTACACCACA 839 36 100.0 30 .................................... ATTCGCCAAACTACAAACAACGTTCACATT 773 36 100.0 31 .................................... ATTCATAAATTGGCATGTTTTTACCTCCGAT 706 36 100.0 30 .................................... TTTACTATCAAATTGATACGAAGTTATCTG 640 36 100.0 30 .................................... CGTTGTTGACATAATACAAAATGTGTACTA 574 36 100.0 30 .................................... AAAGCACTAGCTTTAGCCACAAGCAACGAG 508 36 100.0 30 .................................... CTAACACATAATAACTTTTCTGTATGTATT 442 36 100.0 30 .................................... AAACAGCAGAACAATTCTTTAAAGGTTATG 376 36 100.0 30 .................................... AATCACGAAATTATCTACGATGATGATTAG 310 36 100.0 30 .................................... CCTATTAAGACATGATTATAAAGCTGTAGT 244 36 100.0 30 .................................... AAACGAAGTTAATCATGGGCATAGTACACA 178 36 100.0 30 .................................... AACTTTGTTTATCGATTATTGCTTTACTTT 112 36 100.0 30 .................................... CAAATTACACAAATGGTAATGATGGCAACT 46 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTTGTACTCTCAATAATTCCTTATCAGTAAAAC # Left flank : GATTAATGAAAAGGAGGAGATGGTTTGGTTAGTCATAATTAATCCAGAGAGCTTCTTAGAAACGACTGACTTAAATTTATTGTTTGAAGAATTAAAAAGGATAGCTCGAGAAACAAAGCAACTCAAATTTTTTATTTTTTCTAATCGTAGTTTAGACATTAATTATTCAATTGAGGATATAGAGAAGACCGTACTTTTATATGATACATATGAGCAATTACCTGAGTTTTGTTACTTTAAAGAAAGCATCGAGAGACATTATCCTGATACATTAAATTTGAGTTCTAAGGATTTAGTGGAAAGCTTTTTTCGAATATCTCATTTAGTTGGTAATAGTAAGTATGATAACTTTTACTTAGATGCAAGAGATATGATATTATTAAAAGTGCTAAATAGTATTTTAGAAGTTAACTCATCAACTGAGACGTCAGTTCAACAGTTAACGAAATTAGAAAAAGCCTTTTTAAAATAGTTTCATTAGGAATAAAAATAAATTTGAG # Right flank : CGTAAGTTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTCCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 49-482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVX010000035.1 Vagococcus sp. DIV0080 scaffold5.35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49 36 100.0 30 .................................... GTAGAAGCAATTTCAAAAGTCGGTGATGAA 115 36 100.0 30 .................................... ACATTTTCGGCAGAAGTTGACATGTTATTT 181 36 100.0 30 .................................... TATCAAAGCTATGCAAAGAGGACACTTGAA 247 36 100.0 30 .................................... TGGTGAACAATCTGAAGGTGACTATTCGTT 313 36 100.0 30 .................................... ACAACACATCAGTGCAATCTATCAAGTCAT 379 36 100.0 30 .................................... GAAGAAACAAACAAAAATACTCCGAGCTAT 445 36 83.3 0 .........................AT.AA...G.T | TG [460] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.6 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : TTTGAATGCTTCCAAAACAAGTAGAAAAGGGTGATTTAGCAACTCCTTG # Right flank : TTATTTAACTACCAGACTTAAGGATAATTTCGCGATGTGTTAGTTTGATTTTCCATCCTATCATCATTTTATTTGCATCTTACCCAGATTTTTGTTACTATAATGATACAATTTTAACTCTTAGGGGAGTAACCAGTAGCAAGAAAAGGCTGCGCTAATGTCAACAGTAAGTTAACGACTTGTCGTTTTCTGGTATTAGATGAAATGGTGAGACTTAAGACAAGTAAACAACTTGTCTTAAGTCTCTTTTTTGTTAAATGGCACTCTAACTTAGGAGAAGAGAAAGGGAAGAAGAATATTGGAAAAGGAAACGTATCAAGTTGAACTTGACGAAGTAATGGAGAAAGTTGCTAGTCAGTCATCAGGATTAACGCAACAAGAAGCAAGTAAACGTTTAGAAACAAATGGCTTCAACCAATTAAAAGAAGCGCCTAAAAAATCAACATGGTCTTTATTTTTTGAAACATTTAAAGATGCAATGGTTATCGTTTTATTAGTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //