Array 1 108361-106254 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNN01000001.1 Salmonella enterica strain BCW_4933 NODE_1_length_449254_cov_4.12768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108360 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 108299 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 108238 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 108177 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 108115 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 108054 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 107993 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 107932 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 107871 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 107810 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 107749 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 107688 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 107627 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 107566 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 107505 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 107444 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 107382 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107321 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107259 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 107198 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 107137 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 107076 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 107015 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 106954 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 106893 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 106832 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 106771 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 106710 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 106649 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106588 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106527 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106466 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106405 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106344 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106283 29 89.7 0 A...........TC............... | A [106256] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125745-124619 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNN01000001.1 Salmonella enterica strain BCW_4933 NODE_1_length_449254_cov_4.12768, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125744 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 125683 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 125622 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 125561 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 125500 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 125439 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 125378 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 125317 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 125256 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 125195 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 125134 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 125073 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 125012 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 124951 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 124890 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 124829 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 124768 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 124707 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 124646 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //