Array 1 743806-741825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRG010000001.1 Nocardia farcinica strain N-14 NODE_1_length_885891_cov_48.398645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 743805 29 100.0 32 ............................. GCCTCCCAATACCCGTGGGGTGTTGACGCGTC 743744 29 100.0 32 ............................. GAAGTCTCGCGCTTGTCGCTGTCGGCTCCGGC 743683 29 100.0 32 ............................. CGGTGCGCCCACTGCGCGCGTGCCCGGAACAC 743622 29 100.0 32 ............................. ACCAGGATCGGAGTGAGGAACAAGCTGGCCGC 743561 29 100.0 32 ............................. GCGGCAGAACGCCCCGGCCTAGCTCCAATAGG 743500 29 100.0 32 ............................. GAGCTCAATCCTGCGTTGGGGCCGACCAGGCT 743439 29 100.0 32 ............................. AGTCACATGGCTACGACGCTCGGCACGCTCAA 743378 29 100.0 32 ............................. GACACCGGGACGTTCTCGGTGCCGGTGCCGTT 743317 29 100.0 32 ............................. GCCGGGATCTGATCGACAGCGAGATCCTCGAC 743256 29 100.0 32 ............................. GAATGGCTCGGCTGGAACGACGAGGAGGTGGC 743195 29 100.0 32 ............................. CGATAAATGCGGAAGCTCAAAAAGCCCCTGAC 743134 29 100.0 32 ............................. ACATCGGCCGCGGATGCGCTGCCTCTATCCTG 743073 29 100.0 32 ............................. GCCCGCGCGGCGCCGGGATGCCCGGCCGCCCA 743012 29 100.0 32 ............................. TCCTCGCCGCGGCATTCAGGGAGCACTGCCCG 742951 29 96.6 32 ............................G CCGTGGCCGAGGCCGGGTGAGCGATTGTGACA 742890 29 100.0 32 ............................. CCGAACGCGCCGAGCTTGTGCGCGCGGCAATC 742829 29 100.0 32 ............................. GCCCACACCGAGTGCGCTGACCCCGGGGGTGC 742768 29 100.0 32 ............................. GCGCCATTGGCCGCATCGGTCAGGGGGCCGAG 742707 29 100.0 32 ............................. CAGGCGGTCGCGATGACCAGGTAGGCGACGCC 742646 29 100.0 32 ............................. TCGGCGCGCTCGGCGAGGTCTTCGGTCAACGG 742585 29 100.0 32 ............................. GCCAGAACTCAGGCTTGGTGCTGCGGATGCGC 742524 29 100.0 32 ............................. ACCCAGACCGCCGCCATCGCCCGCGCTGACCG 742463 29 100.0 32 ............................. TTCGCGGTCGTCTCGACGCCGTCGACCGAGGT 742402 29 100.0 32 ............................. CCGGTCAGGACCGTCCGGCTCACACGTCCTGC 742341 29 96.6 32 ..............T.............. GAAAAGACCGGCAACACCGCGGTCGCCGTCTT 742280 29 93.1 32 ..............T.......C...... CCGGCTTCTGATCGTGAGGCGGTGTCGGAGAT 742219 29 96.6 32 ..............T.............. GGCAGCTGGCGCATCTGGGCGCGCCAGTGCGG 742158 29 96.6 32 ..............T.............. CGGGCGGCGATGTGTTGCTCCAACCGCTTCAG 742097 29 96.6 32 ..............T.............. GGTCAGTTCGGCCGCGCGGAGGCACGCCCCGG 742036 29 93.1 32 ..............T.............G TACGACCACTTCATGGTGACCGGCCACGTCAA 741975 29 96.6 32 ..............T.............. GGCTCCACGATCTGGAAGCGGCAGGACTTGGC 741914 29 96.6 32 ..............T.............. CGGGGCACTTGGGACCACGTGGATTCAGCCCG 741853 29 89.7 0 .....................GC...T.. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTCGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCAAGGTCGTATCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCAGCAACCGCACCAACCGCCCGTTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTTGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 861049-859513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRG010000001.1 Nocardia farcinica strain N-14 NODE_1_length_885891_cov_48.398645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 861048 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 860987 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 860926 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 860865 28 100.0 33 ............................ CAGGCCGGTCGCGCTGACCTTGCCGATGACGCA 860804 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 860743 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 860682 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 860621 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 860560 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 860499 28 100.0 33 ............................ CCTGTTCGAGGGCCTGGACGAGACGCTGCTGCA 860438 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 860377 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 860316 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 860255 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 860194 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 860133 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 860073 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 860012 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 859950 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC A [859929] 859888 27 96.4 33 .................-.......... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 859828 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 859767 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 859541 28 71.4 0 ...G..TG.....CG.TC..A....... | G [859514] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 23 28 98.6 41 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 870738-870206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRG010000001.1 Nocardia farcinica strain N-14 NODE_1_length_885891_cov_48.398645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 870737 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 870676 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 870615 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 870554 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 870493 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 870432 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 870371 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 870310 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC T,C [870282,870301] 870233 28 72.4 0 A.......G..AC.T..C..-.C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 883375-881758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRG010000001.1 Nocardia farcinica strain N-14 NODE_1_length_885891_cov_48.398645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 883374 29 100.0 32 ............................. CGGTTCCTCGAAGTCGACTACGCGCCCCGGGA 883313 29 100.0 32 ............................. GGGAACGTTCGTCTCGGGTCGTAGCTCCCACT 883252 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 883191 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 883130 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 883069 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 883008 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 882947 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 882886 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 882825 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 882764 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 882703 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 882642 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 882581 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 882520 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 882459 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 882397 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 882336 29 100.0 32 ............................. CGGCTCACGATCGGCATCGAGGCCGAGAACAA 882275 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 882213 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 882152 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 882091 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 882030 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 881969 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 881908 29 93.1 32 ................C...A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 881847 29 96.6 32 ................C............ CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 881786 29 86.2 0 C...............C...A..T..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.9 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GAGAAGCTGATCGTCGCCGACCTCTTCACGCTGTGCTCCCCGCGCATGCTGCGTCGCGGCCGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10148-10420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRG010000014.1 Nocardia farcinica strain N-14 NODE_14_length_118267_cov_50.195717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10148 29 100.0 32 ............................. GCGAAACGGGCGCGGGGCCAGGTCGTCGTCGA 10209 29 96.6 32 ............................G CCTTCCCCGGCGACCCGCTGGCACCGACCCCC 10270 29 93.1 32 ...T........................G TACTAGATGCGGCCGACACGGCCTGAATCTGT 10331 29 100.0 32 ............................. GCTGCGAGAACTTCCAGTTCACCGCCGCCGGC 10392 29 93.1 0 .C............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGCTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACATCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGCTGCCCCCGCGAACGCAGAAATGACTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGTCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //