Array 1 40986-39432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFE01000007.1 Escherichia coli strain MOD1-EC6009 MOD1-EC6009_7_length_172974_cov_34.5891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40985 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 40924 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 40863 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40802 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40741 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40680 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40619 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 40558 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40497 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 40436 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40375 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 40314 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 40253 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40192 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40131 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 40070 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40009 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 39948 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 39887 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 39826 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 39765 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 39704 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 39643 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39582 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39521 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67754-66688 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFE01000007.1 Escherichia coli strain MOD1-EC6009 MOD1-EC6009_7_length_172974_cov_34.5891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67753 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 67692 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 67631 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 67570 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 67509 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 67448 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 67387 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 67326 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 67265 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 67204 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 67143 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 67082 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 67021 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66960 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66899 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66838 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66777 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66716 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //