Array 1 26423-28027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHR010000020.1 Streptococcus suis strain HCJ3 HCJ3_Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 26423 36 100.0 30 .................................... CAGCGATTTTGTAGGAAGGGGGTTAGTTTT 26489 36 100.0 30 .................................... ACAAATTTGTCAGAACAGTTTGAGGGGCTA 26555 36 100.0 30 .................................... TGCTCCAGGCGGAGGAGGTACAGTAAATAT 26621 36 100.0 30 .................................... GTTGATGCCGGAAAAATGACAGTAGATGCT 26687 36 100.0 30 .................................... TACATTATTTATTTTGTTACTGTTGATAAG 26753 36 100.0 30 .................................... GGAGCGATTGTGCAAACCAACAAGCACCGT 26819 36 100.0 30 .................................... TATAATGACGTTATTATACTAGCTTATGCT 26885 36 100.0 30 .................................... TAAATTGTTTTAGTTGGAACCTCTTGAGGG 26951 36 100.0 30 .................................... TAGATGATATACACCTTGAACTTTACAAGC 27017 36 100.0 30 .................................... ATGCTTATGCCAGTGACCCACGATGGTACA 27083 36 100.0 30 .................................... TTTATCTTATCAGGATTGGTAATACGATAT 27149 36 100.0 30 .................................... TAGAATATGACGGTTATGTATATATTAGCT 27215 36 100.0 30 .................................... TATAATAAAACACCCTAAAATTATATACTT 27281 36 100.0 30 .................................... ATTCCAACTACCGTACAAGTCTTCCGCTGT 27347 36 100.0 30 .................................... CTATATATCATAAATTAAACATAGGGAAAT 27413 36 100.0 30 .................................... TCGCCCGTATACCGATTTCAAGCTCCTCCT 27479 36 100.0 30 .................................... GCGTTGTGACGGTTTACTTTGAGAATGTCT 27545 36 100.0 31 .................................... CTTGCGTTCTGCGTTGTCTACGGCTGTGCGT 27612 36 100.0 30 .................................... AAATCGTGATAAGATCGCTTGCGCTGTATT 27678 36 100.0 30 .................................... TAATATAAATTTATTTTCTAATGAAATAGA 27744 36 100.0 30 .................................... TGACTTATAGAAATTGCATTGGTAGCAAGC 27810 36 100.0 80 .................................... ATAATATCAATAATCGTGACTTTCATAGCAGTTTCGAATGGTTTCAAAACATTTCTGACTTTGACAGTAAAGAATGTGCC 27926 36 100.0 30 .................................... CGCGTCTTAATTTCCCATCGTCCACGCTCT 27992 35 88.9 0 .........................A.-.A.....G | T [28025] ========== ====== ====== ====== ==================================== ================================================================================ ================== 24 36 99.5 32 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCAGAATTTGTGACGGATGGGATGATTGTTGGGCTTGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //