Array 1 59-307 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJAJ01000154.1 Mycobacterium tuberculosis strain 1280 contig00154, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                                        	Insertion/Deletion
==========	======	======	======	========================	=======================================================	==================
        59	    24	 100.0	    55	........................	GGGGACGGAAACTCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA	
       138	    24	 100.0	    48	........................	GGGGACGGAAACGCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG       	
       210	    24	 100.0	    50	........................	GGGGACGGAAACTCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT     	
       284	    24	 100.0	     0	........................	|                                                      	
==========	======	======	======	========================	=======================================================	==================
         4	    24	 100.0	    51	GTCGTCAGACCCAAAACCCCGAGA	                                                       	       

# Left flank :   AGAGAGGGGACGGAAACCTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGTG
# Right flank :  |

# Questionable array : NO	 Score: 5.40
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.45, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0   Confidence: HIGH] 

# Array family : NA
//


Array 1 64626-64301 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJAJ01000022.1 Mycobacterium tuberculosis strain 1280 contig00022, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                                   	Insertion/Deletion
==========	======	======	======	==========================	==================================================	==================
     64625	    26	 100.0	    47	..........................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCGTCAGAC   	
     64552	    26	 100.0	    50	..........................	GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGTCCTCAGAC	
     64476	    26	 100.0	    50	..........................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCAGAC	
     64400	    26	  96.2	    48	........A.................	TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGTCGTCAGAC  	
     64326	    26	 100.0	     0	..........................	|                                                 	
==========	======	======	======	==========================	==================================================	==================
         5	    26	  99.2	    49	CCAAAACCCCGAGAGGGGACGGAAAC	                                                  	       

# Left flank :   CGGA
# Right flank :  TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG

# Questionable array : NO	 Score: 5.88
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [0,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,1.15   Confidence: MEDIUM] 

# Array family : NA
//