Array 1 14960-12492 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMI01000039.1 [Ruminococcus] lactaris strain AM09-9 AM09-9.Scaf39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14959 32 100.0 33 ................................ ATGAGATCTACAGATGTTGCTATCCAACTTCCG 14894 32 100.0 35 ................................ TACCAGGCGATGCAGGAATATTACGGACTGGATAC 14827 32 100.0 34 ................................ ATACGATACCGGGTCTAATTTCGGATCAGGATTT 14761 32 100.0 33 ................................ CATAAATACAGCGTATACAACGGTGTAGTTATG 14696 32 100.0 35 ................................ ACAACTTTCCTGTCTTTTGCATAACGGGTACTTGA 14629 32 100.0 35 ................................ CACACTCTCGAAGGGATGGCGAAACGATGAGGGCA 14562 32 100.0 34 ................................ ACGAAATGTGGCACTTAAAGCAAGCGGAAAATTT 14496 32 100.0 35 ................................ TTCCCAAAGCTTCCGGCATATCCATCCTGTCCACC 14429 32 100.0 34 ................................ TGCATATAAAGTAGGTCGTGAGGTACATTTTAAC 14363 32 100.0 34 ................................ CTTGAAACGAAGCACAGACAGACGCTGGAGCCTA 14297 32 100.0 34 ................................ TGAAGCTGAGGCGTTAGAAGAACTGGAACGGATC 14231 32 100.0 33 ................................ CCCGGATTATGCAGAAGAGCAGGGGAACTCATC 14166 32 100.0 33 ................................ CCCGGATTATGCAGAAGAGCAGGGGAACTCATC 14101 32 100.0 33 ................................ CCCGGATTATGCAGAAGAGCAGGGGAACTCATC 14036 32 100.0 33 ................................ CATGAAAACTATCGGTAGAAGCATCACACCACA 13971 32 100.0 33 ................................ TGATGCGACCAAAGCATCATCATCCCAAAATCC 13906 32 100.0 33 ................................ AGAACTGCAGAACACTATGCTGAATGCAGAAAA 13841 32 100.0 36 ................................ AACTAAGATTACAAAGTTTAGTCCAAAAGGACTTGC 13773 32 100.0 33 ................................ CTGGATGCCTCATCTTTTGCTTTTCTCTTGTAT 13708 32 100.0 35 ................................ TTGCAATGAAAACCCGTTAATTCTTGTAACAAGAG 13641 32 100.0 33 ................................ CATTTGTATCAACGTATGCCATTACAGCACATG 13576 32 100.0 34 ................................ CGTATCTCTCACTGGGATCTTGACCTTTCCGGCA 13510 32 96.9 34 ..............A................. ATGTCCTTCCCCTTCCGGATCTCTTTCCCTTTCT 13444 32 100.0 34 ................................ GCAGCAGGGGGCGATACAGCGAAGGCTGCATTTA 13378 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 13313 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 13246 32 100.0 34 ................................ GGAACACTTGTTGATCTCCATGATTGCTGTCACT 13180 32 100.0 33 ................................ ACAAAATCAACAAGATTTCTCAGTATATTGGTT 13115 32 100.0 34 ................................ ATCTCTGCTACCTCCTAAAACTTAGTTACTGAAC 13049 32 100.0 34 ................................ TGTTGTAATGGAGAAAAATACGGCACAGTCAAGA 12983 32 100.0 34 ................................ TATCACAATTGGGAGAACTTTTGTCCCCGCCTTG 12917 32 100.0 34 ................................ AAGCCTGCAACAACTCTACACGCCTTCCCACACT 12851 32 100.0 34 ................................ AATGAATCGGATCGCTTGCCGTATGTCCTCATTG 12785 32 100.0 35 ................................ CATCTAAATGGTAAATAGCTTTTTTGCCGTATTTA 12718 32 100.0 33 ................................ CTGCAGATATCTTTTTCTCATCATTCCCCATCT 12653 32 100.0 33 ................................ GACTCTCTCTATCGGGAAACCGGTTGCTATTTT 12588 32 100.0 33 ................................ ATTTGTGAAGTCGGCGTGGGGGTGGGAGTATGA 12523 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.9 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : ATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGNNNNNNNNNNTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATGAAAAATAGAATAGTAGTGATAGAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 41825-43451 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMI01000004.1 [Ruminococcus] lactaris strain AM09-9 AM09-9.Scaf4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 41825 29 100.0 38 ............................. AATCTTCCGCCTGTGACCTGGGCCACAAACAAAACATC 41892 29 100.0 50 ............................. TCACTCGCATCATCACGGTATACTTAAACATTTTTCAGTTACAAAAAAAA 41971 29 100.0 41 ............................. GCGGTACATAAACATTTACCTCTCTATCATAGTGCATTAAT 42041 29 100.0 40 ............................. TTATTAGAAGTCGCATTCAACCTCTATTCTCAACCATCTT 42110 29 100.0 37 ............................. AAGCATCTGCAGGGAAAAAGCATTCCCCAAGAAAATT 42176 29 100.0 43 ............................. CTGTGTCAGGATTAAAATTCCTTGGTACATAAGGAAGGAAAAA 42248 29 100.0 40 ............................. TTTCACAGTCTTTGTCTTTAAGTGTTTCTAACATTTATTT 42317 29 100.0 44 ............................. ATTCTTGCTGAATACTTTCATTTAATTTATCCTGCAGTACTTCA 42390 29 100.0 48 ............................. ATGCTGTAACTCATTTTCTGCAACATTCGTATGATCAAGAACCTGCCG 42467 29 100.0 50 ............................. GATGATGAAACTTATTTTAAAAGACGGTTTCGAGATAATCTAAAGGATTA 42546 29 100.0 65 ............................. AAAACCGCATCAACCATTGAAGGATCTTTTGCATTAAAGTCATTTGGAATGAATCTTAATGCAAA 42640 29 100.0 40 ............................. AAGAGACCAGATTCAGTATAACCTGCAGCACCCAGTTCGT 42709 29 100.0 48 ............................. AGACAATTTCTCTACTATCAGATTATCCTTCTAATCTCAAATCTTCAA 42786 29 100.0 44 ............................. AATCATCATCACGCTGATTGAATCTGCCATATCTTCCGAAGTTT 42859 29 100.0 40 ............................. CTTTAGAAAGACTGAAACTCAATTTTTCTGTCTTTTAATG 42928 29 100.0 42 ............................. GTTACAACGGATGAAATTCCATCAAGAGTTTTCTCTATGAAC 42999 29 100.0 39 ............................. CAGTTTCTTCTTTGAGCTCTCTGACGGCACCATCGATTG 43067 29 100.0 42 ............................. GGATTTCTCTTGTGATTAACGAAAAATGGTTTTCCGTTATCA 43138 29 100.0 42 ............................. GCCTCTAATAACCCAGTTGTTGTATCACGAAAAAATATATTT 43209 29 100.0 45 ............................. TATCCACACTATCCACAGCAAAGCCTTCATCGAGAATTTTATCCT 43283 29 100.0 45 ............................. ATGCTGTTTTCTCAGAAGTTGTTGCATCATCAGATACATCTTCTG 43357 29 100.0 37 ............................. TGAAAAATCAGCACACTTAGAAACATTCCAAGTTTCT 43423 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================= ================== 23 29 100.0 44 GTCGGACATTACCTATGAGGAATTGACAC # Left flank : TATATTACAGCATGGTATGGAATTTACAGACTTTGCGGTGAAAGAAAGTATCTTGATTTCCTGTATCAGACAGGTCTGGGAAGTAAAAATTCGCAAGGCTTTGGAATGTTTGAAATTTTGTGAGATGAAGGGAAAAGGAAGGTGCCTGAAACGGAGGCACTTTTCTTTGTGAAAAATAGTAAGAAAACTGATAAATACGAAAAAGTCTTAAAAAAGTCCGTCGACCTTAACTCCTTGGAAATACTGGGAATTTCAGCGGTGGAAAATGGAAAAACATCTATTTTAAACCTCAAAACACCACTTTTTAGAGGAAATGTGAAAAAAAGTCCGTCGACCTCAGGAAGAAAAATCGAGATATATAAAAAGGCTTAAAAAGTGTTGAATTTATAAGGAAAATCAGGATATGAAAAAACTGGTGTCGACGGACTTTTCGGCTGAAAATTGATTGATTTTAGGGAAAAAATGAAGTATGATGATAGCAACAGCTGATAAATACGGCT # Right flank : CGTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGACATTACCTTTCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATTGTAACTACTAACTTTCAACTTTATGACATGGAGAAACGGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCGGCAGCTAGGGTATCATTTAAGGGAAAAAATGACAGCAGTGGGATGGATGGTGTACGGGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAAAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATCCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGGACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGAATTCTCAGAGCATTCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 66899-68449 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRMI01000006.1 [Ruminococcus] lactaris strain AM09-9 AM09-9.Scaf6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 66899 36 100.0 30 .................................... TTACACTGCTGCCCGATATCTGCCACCGCA 66965 36 100.0 30 .................................... CGGATCATACGATTCCATTGAAGAAGATGA 67031 36 100.0 30 .................................... CGCGAAAGAATGTCCAGGACCATGCATCCA 67097 36 100.0 29 .................................... AAAACTTCAGGATATCATACTGAATTTCA 67162 36 100.0 30 .................................... AGCATTTCGTCTTGGAACGACCTTTGATAT 67228 36 100.0 30 .................................... TCAGCACCATAGCACAGAGGTTGGGTGTAT 67294 36 100.0 30 .................................... ACAGTAAACGGACGCTTATTCCAAGGATGT 67360 36 100.0 30 .................................... CCATGTTTATCGGAACAGGTGTATTCGTGA 67426 36 100.0 30 .................................... CAACAGTGCTAGGTGACACGTCTATGGGGT 67492 36 100.0 30 .................................... ACCACAGGCGGTATATCCTAAATATTTTCC 67558 36 100.0 30 .................................... AATGGAAACATAGAAACAGCAGGAAGGTTG 67624 36 100.0 29 .................................... AATGCGGCTGTATCATCTGCCGCACAATG 67689 36 100.0 30 .................................... AGACAATGACTGTATACTGGTGAGCGACAA 67755 36 100.0 30 .................................... CGTTCAATCGTCGTGAACGCTTTGCTCTTT 67821 36 100.0 30 .................................... TCTGCGGCAGAATATATAGTAAAAAATAAC 67887 36 100.0 30 .................................... CAGGAGTCAGGGGAAAGGCGATCACAGACG 67953 36 100.0 29 .................................... GGAGCAGACGCACTTGAGGACTAAATATA 68018 36 100.0 30 .................................... TTTTCTTTTTCCGACATCTGATCACCTCGC 68084 36 100.0 30 .................................... CTGTTATGCACCCTGCAACTGCCGTTTGTA 68150 36 100.0 31 .................................... GTCGATGCGTTTGTATTGTACATGAGCGTCT 68217 36 100.0 29 .................................... AGGATTTGGAAAAGTAAACTCATCTGCCG 68282 36 100.0 30 .................................... CCATCGTGAAAGCTACAGAAGGGTTGAGGT 68348 36 100.0 30 .................................... ACAGGAAACTGCACTGACACATTAATCTTG 68414 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Left flank : TCCGGGAAATTGTCTTCATTCACCGTAATCCCATCACTTGTATCAGTTACTGGCACTGAATTTATTTCTTTATGGTATTTGTCAAAATCAACTATTAATTTTCCACACTTTTTCTCCCACATAATTCCAATATGGTTCTTGTATTTTTCAACATAAGCACGTCCATATTTTTCAATCAGCCTTTGGCCAGCTATATTCGTTGCCTTTTTCTCGCTTATCATAACCTGTCACTCCTAATATCTCATTGATCCAATCCTGGGTGCTTGCAGTAAACTCTTTTGTATTACCTTTCAAATCTATTATAATACTTTTTTCTTGCCAGGTAAATAGCTTTAACGTCTCTCGATCTTCCGGTGACGCAATTATTTTCGTCATTGTCGGATGGGAATGAGCTGTCCACTCGTAATGATTTTCTTTTATAATTTTCCATGCATCATGCGGAATATGCCACGTTTTTGAAGTTCCATGTATAAGAATCTTTGATGATTTCCCTGTGCTTA # Right flank : CCTCAAATTCAAAAATGAAATGCCATCATTCGCATAAAATACAGGTACTCAAACTGTTAGGATGTTATATTTCACATCCATCTTTATCTATAATATACCTTGTTACACCCTCAATGCAATCTCTCGCACAGGTTTCAATCAACAAAAGCTGAATTTCCTGATACGTCGCTTCTTTTATTAATTCATCAATCTGCTGATTTGATAAATAACTTCGCAAATTAACAAATACAAAAAGCTTTTTCTTTAATAATCGTTCCACTATTCGCATATATCTCACAAGACGTTCTAAGAAGTTTTCTTCCAGTACCTCATATTTAATACCAAAAGCTTTAAATAATGAGGCAAAATCTATTTCATCCGCAAGATCAAGGATATAGTCTGTCTCCTGTTCAAGCTGTAATAAATACTCTTGCAGATATTGCTTCATTTCCTGGGTTTTCACATAGAATCGTTCGTCCGCAGTAAGCTTTTCCAATTCCATATAAAGTTTGCTGATCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //