Array 1 122019-121258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016877.1 Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 122018 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAAAGCTA 121952 36 100.0 30 .................................... CCAACCGACTTCATCACGGAATAAGTGTGA 121886 36 100.0 30 .................................... ACAATTAGGAACTAAATTATCTTACATCAA 121820 36 100.0 30 .................................... CGAAGTTATAAAAATGATGTCGTTTAAGTA 121754 36 100.0 30 .................................... GCTGATAACATCCCAAACGCAACCAGTGGA 121688 36 100.0 29 .................................... AGAGGTAATGATGGTTTCCCAGGTAAAGA 121623 36 100.0 30 .................................... CGATGGAATCAATAAACTGATTTCTGATTT 121557 36 100.0 30 .................................... GGCAAGTTCAGGTGGAGCTGGTGGACACGT 121491 36 97.2 30 ....................T............... AAAAACCAACTCAACCTATAATATGGTCAT 121425 36 100.0 30 .................................... AATGTCATGGGGTGCTGATATGTCTAGCTC 121359 36 100.0 30 .................................... AGTTATCTGTATTACTTTCCGTTTCGTCAA 121293 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTACCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGTACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATATTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1254932-1255890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016877.1 Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1254932 36 100.0 29 .................................... CGATTGGATCACCAAAGCTTTGTCTGATG 1254997 36 100.0 30 .................................... TCAAAAAACTGTGATGAGACTTTAGGTTGG 1255063 36 100.0 30 .................................... CACTTTCAAGCGATCGAGTCCATTTGTCGT 1255129 36 100.0 30 .................................... CTAAAATTGATGTAACAATCAATAAAGGTG 1255195 36 100.0 30 .................................... CTGTCTGAAAAATAACCGACCATCGTTCGA 1255261 36 100.0 30 .................................... GTCAGTACCATCAATATGCTGGACGGCACG 1255327 36 100.0 30 .................................... ATGGTAGCTCCGCTCTTGGCTTGTGCTTCA 1255393 36 100.0 30 .................................... TGAGGAATTATTCAGACAGTTTTTAAACTA 1255459 36 100.0 30 .................................... CCTTCCTAAGTGCATGAAAATCGCAAACGG 1255525 36 100.0 30 .................................... CAAAGTCCTCTTCGTATTGATCATAGCTTC 1255591 36 100.0 30 .................................... AGGTCGAAGTTTGGGAAATTGACTTGGCTG 1255657 36 100.0 30 .................................... TTGATAAGTCTTATATTGTCACAGGAAAGA 1255723 36 100.0 30 .................................... TAGACATCTACGACTTATTTTTAAAGGCAG 1255789 36 100.0 30 .................................... GACGTGTCAACACGGTTAGTTAACATTGAT 1255855 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATATCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAATTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGATTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTCGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 1506836-1507597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016877.1 Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1506836 36 100.0 36 .................................... CCTACAATAGCATTCATTGTAAATTGTTGCATTTTT 1506908 36 100.0 36 .................................... TCATCTGGTAACTGCTCTAGTGTTAGTATGCGATTG 1506980 36 100.0 34 .................................... TCACGGTCCTTTTTCATCTGTCTCAAAATTTCAA 1507050 36 97.2 39 .........................A.......... TGTTCCATATTGGTAGCATTAATGAATCTGTACTTATCT 1507125 36 100.0 38 .................................... ACCCCAACTGGTTTGTAGGTTATTTCCATTGGTAGTCC 1507199 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 1507271 36 100.0 36 .................................... TGAAAGCACTATGGAATGATACATTAGTAGTTCTGG 1507343 36 97.2 39 .G.................................. GACAGAATTGTGGACACTGCCATACTAATAGATGTACAG 1507418 36 100.0 36 .................................... AGATGTTTTCATGGTATACTCCTTTTAAGTTGTTTT 1507490 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 1507562 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 98.0 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGACTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTTATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGACTCCAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //