Array 1 83372-84193 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOT01000103.1 Escherichia coli strain MCC506 NODE_112_length_84680_cov_44.623051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83372 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 83433 29 100.0 32 ............................. CCTCTGGTTTAAAAAAGCCGCCGTCAGCGAGC 83494 29 100.0 32 ............................. ACGCAGAATCACGACGCGGTAGAGCGTTACGT 83555 29 100.0 32 ............................. ACCCCGGCAGTGTCTGTTTGACTAATTTATGC 83616 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 83677 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 83738 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 83799 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 83860 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 83921 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 83982 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 84043 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 84104 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 84165 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAGGAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8282-9714 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOT01000064.1 Escherichia coli strain MCC506 NODE_70_length_33032_cov_43.186485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8282 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 8343 29 96.6 32 ............T................ CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 8404 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 8465 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 8526 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 8587 29 100.0 32 ............................. GGAATTATATCTTTTTGCTTATCTGAAAGAAT 8648 29 100.0 32 ............................. CCGCCGGGGATTTAATGATTTTGGGGGGCAAC 8709 29 100.0 32 ............................. GCGCGAGTGAGTTAATTCCTCAGACTATCGAC 8770 29 100.0 32 ............................. ATTTGCTCGCGATGCGCCTGCAGCTGGAACCC 8831 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 8892 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 8954 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 9015 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 9076 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 9137 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 9198 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 9259 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 9320 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 9381 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 9442 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 9503 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 9564 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 9625 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 9686 28 72.4 0 .AA........C..T....A..-.C...C | T [9705] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //