Array 1 73996-75023 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CDEC01000014.1 Streptococcus agalactiae strain Mother9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	====================================	================================	==================
     73996	    36	 100.0	    30	....................................	AAAACCAATACTTCCTTCTGTCATGGCAAC  	
     74062	    36	 100.0	    32	....................................	CCCCCTTATCTGTTGCTGAATAGTAAATTTTA	
     74130	    36	 100.0	    30	....................................	CCATGTCCCACGCCCGCTGTATTGCTCTAG  	
     74196	    36	 100.0	    30	....................................	AAGAGATTCTAAAAAATACGGATGTGTAGA  	
     74262	    36	 100.0	    30	....................................	TGATAATTCATAGAGAGATGTTCAGCTAGT  	
     74328	    36	 100.0	    30	....................................	GTAACCATTACAGCTAACTCGGAAAGACAA  	
     74394	    36	 100.0	    30	....................................	AGACTTAGATTCTATTCAAGACATGGTTTT  	
     74460	    36	 100.0	    30	....................................	GCATTCTTAGATAAAATCATTTCTCCATTA  	
     74526	    36	 100.0	    30	....................................	TGTCAACAGTACGTGAGACGAGTGTGTAGG  	
     74592	    36	  97.2	    32	..............T.....................	TGAAGTTGATGGATATGTTGATTTAGAGCTGT	
     74658	    34	  91.7	    30	--............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA  	
     74724	    36	  97.2	    30	..............T.....................	AAACATCCGCAACGGGATAAATAAAGCTAG  	
     74790	    36	  97.2	    30	..............T.....................	AGTTTCTTGTGGGTTAGCTTGTCCACCGTA  	
     74856	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT  	
     74922	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA  	
     74988	    36	 100.0	     0	....................................	|                               	
==========	======	======	======	====================================	================================	==================
        16	    36	  99.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                                	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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