Array 1 851495-853918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFHS010000001.1 Phocaeicola dorei strain FSDTA-HCK-B-6 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 851495 47 97.9 29 ...A........................................... TACTTCGGTGAAGTACTTGGCAAACACTC 851571 47 100.0 30 ............................................... TAGTGCCAAGAGAAGTGTACGGAACTTGCG 851648 47 100.0 30 ............................................... TAGTGCCAAGAGAAGTGTACGGAACTTGCG 851725 47 100.0 29 ............................................... AGTCCAATAGTCTACATTGTAAGCGTAAG 851801 47 100.0 29 ............................................... GTCCTGAATGTTTTTCTTTTAATGAAATA 851877 47 100.0 30 ............................................... CTCATATCCATGAACAACACCAGAATCACT 851954 47 100.0 30 ............................................... CATGAAGGAAAAGCCGATAGAGCTTATTAA 852031 47 100.0 29 ............................................... GTCTAATACCGGTAAGGATGCCATTACCC 852107 47 100.0 30 ............................................... CATAGGGTTTGAGGTCAATAGCCTCACCTA 852184 47 100.0 29 ............................................... CGATACGCTTACCTGTATAGCGATTCGTA 852260 47 100.0 30 ............................................... CAATATTTACAATATGTGGATTTTGAATCT 852337 47 100.0 30 ............................................... AAAAAGATATCTTTTCATCAGTGTATTGAT 852414 47 100.0 30 ............................................... TAAAGCCTGTAGATACTCCTATTATTCTAC 852491 47 100.0 30 ............................................... AGTCTGTCTTGCCTTTGCGCACCTTCGTGC 852568 47 100.0 30 ............................................... TCCGGACAGGAGAGGTGTCGGCAGGAAGAA 852645 47 100.0 29 ............................................... CTTTTGTTTCGCTCAACATTCCTCATTAT 852721 47 100.0 30 ............................................... TTCAGGTCGCCTCATGTCTGCTCAGGAAGC 852798 47 100.0 30 ............................................... TTCATCCGGAATAGCAGAAAAAGGCAAGCT 852875 47 100.0 30 ............................................... TTGAGCCTGTAAGTAACTAAGTTCCTCTGC 852952 47 100.0 30 ............................................... GCCTGACTCCGGGGAAAAGGTTCCTGAAGA 853029 47 100.0 30 ............................................... ATATTAGCACATTGTTTTATTGGCACATTA 853106 47 100.0 30 ............................................... CGTTATTGGCATCATAAAACCCCTTGAAAA 853183 47 100.0 30 ............................................... AATCTCCTGAAAATGCTTGTGTCAGATACC 853260 47 100.0 30 ............................................... CTCATATCCATCATTGTCATTCAGTTCAAT 853337 47 100.0 29 ............................................... GAATACGGGAGGAACACAAGCTATGGGTA 853413 47 100.0 29 ............................................... ACTTTGAACTGCTCCTTTACAACATGATC 853489 47 100.0 29 ............................................... CGAAATGTAAGTCAACAAGCTGCACTCCT 853565 47 100.0 29 ............................................... CTTGATTATCATCAATCCTCCGAATAGCC 853641 47 100.0 30 ............................................... TGTATTGATAAACAAGCATCCATACATCAT 853718 47 100.0 30 ............................................... AGTAAGGCTGGCATGTGGTTCATGCGGAAT 853795 47 100.0 30 ............................................... AGATAGAACCTGCCTTTGCGCGCCTTGCGC 853872 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 32872-32503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFHS010000018.1 Phocaeicola dorei strain FSDTA-HCK-B-6 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 32871 33 100.0 34 ................................. GTTTCGCCAGTTCGTCATTGATCCGGCTGGCGCG 32804 33 97.0 33 ................................C TTTCCAAGGTGGCTACTACAAATCCTCCCTTAT 32738 33 100.0 36 ................................. CAAGGATTTCTTGCTGGATATTACCGGTGAAATGGA 32669 33 97.0 33 ................................T GCCTGTAACATGATACGGAAGACACGCTGTAGT 32603 33 100.0 33 ................................. TCAATGGCCCAGTATTCGGCAATATCGAAGATG 32537 33 84.8 0 ..........G.......A.A.......G.G.. | AA [32519] ========== ====== ====== ====== ================================= ==================================== ================== 6 33 96.5 34 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCACCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTCTTCTTTTGTTGTTTCACCTAGGTGACAATGCATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATTGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //