Array 1 415888-417869 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOV01000001.1 Salmonella enterica strain BCW_4897 NODE_1_length_417870_cov_5.41188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 415888 29 100.0 32 ............................. CTACAGGATCTAATTTTGATGGATCGGCATAC 415949 29 100.0 32 ............................. ATAGAGGATATAGACTATAATTTAGTTGTTAA 416010 29 100.0 32 ............................. CAGGTGCTTGGGATGGATGAAGTTGACGGGAT 416071 29 100.0 32 ............................. CGATCGGGGAAGCGCTCCGGGTCAGCAAATCA 416132 29 100.0 32 ............................. GCCGGGACCGCCGAGTCAGCGATCACGGTGAC 416193 29 100.0 32 ............................. TTCATTGCGAGATTCAACAAATCGCTCCGGGT 416254 29 100.0 32 ............................. CCTGCCGGAAACGTTTTTGACGCAACAACGGT 416315 29 100.0 32 ............................. TAACGGTGTGTGGGTCGGAGATGCCTCTGATG 416376 29 100.0 32 ............................. TTTATTATTTACGGCAGGGGCTAAGAGTACCA 416437 29 96.6 32 ............................C ATAATTTCATTATATACAGTATCTCCCGATAC 416498 29 100.0 32 ............................. ATAATAAAACTTTCATGATACCACCTAATCAT 416559 29 100.0 32 ............................. GTGGTACAATCGGAGGTGAAGGGGGTGTAAAA 416620 29 100.0 32 ............................. GATTAATATATGGCAGATACAATCGTTATTCC 416681 29 100.0 32 ............................. TAATATGAGTGAAAATAACAATTCATATTTGA 416742 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 416804 29 100.0 32 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTA 416865 29 100.0 32 ............................. CGACCAGGAGCTGCTCACGGAGAGCTCGCTGG 416926 29 100.0 32 ............................. CTATCATTAATAGATAATGTAATAGAGGCTAA 416987 29 100.0 32 ............................. TGATTGAGCTACATTATAAACGAATGATGAAT 417048 29 100.0 32 ............................. AACTGCAATTATTTATAGTAAATTATCCAGAA 417109 29 100.0 32 ............................. AATTTGCTCTCACGCCTGGCGACCCGTCTCGA 417170 29 100.0 32 ............................. TAATAGAGGCTAATATGTTTAAACATAAATTA 417231 29 100.0 32 ............................. CCAGTACCAATTGTCAAATAACCGCATTTAGC 417292 29 100.0 32 ............................. ACGGGGGCGTCATCCTCAACAGTGCAGGCGAT 417353 29 100.0 32 ............................. CCGGGGCCGCTTACGTGCTGATCCTGACGCTC 417414 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 417475 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 417536 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417597 29 100.0 32 ............................. ATGGACGAGAGAGAGCGGAAACATCATGTTGA 417658 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 417719 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417780 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417841 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 118654-115451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOV01000015.1 Salmonella enterica strain BCW_4897 NODE_15_length_135849_cov_5.37658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118653 29 100.0 32 ............................. CATTTTTAGTTAAACTAGCTAATAATATAATA 118592 29 100.0 32 ............................. TGTGGCTTATATGAAATTTCCTATTAACATGT 118531 29 100.0 32 ............................. GTTGGGTAACTGAATATGTTTCTAATAATAAT 118470 29 100.0 32 ............................. AGAAGCGGGTGCGTATGCCGGCAGCAAAAATC 118409 29 100.0 32 ............................. ATGTCCGTAATCATTTTGGTCAGCCAGTATCA 118348 29 100.0 32 ............................. TTTCAGGCAATTTTTTCCGGCAACGGAACGAA 118287 29 100.0 32 ............................. CCACATTGAAATGCTCGAGGACGCCGCAGACC 118226 29 100.0 32 ............................. GCCGAATGCAAAACCCCCGCAAACAGCAGCAA 118165 29 100.0 32 ............................. TTTTATGTATGTATCTTTCAATATCAAAATAT 118104 29 100.0 32 ............................. AATTCCCGACCCCATCAGCAACATTAACTCCG 118043 29 100.0 32 ............................. ATTAACCCTCAAATGTGGTTATTTGCGCAGGC 117982 29 100.0 32 ............................. ATAGATTCTCTTAAATCATTCATTAATTTAAA 117921 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 117860 29 100.0 32 ............................. GATTAGTTTTACTGTAAGCCTTGTATGAATCT 117799 29 100.0 32 ............................. CCCCATATGGTATGGGGCCAGAGTAATCAGGT 117738 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 117677 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 117616 29 100.0 32 ............................. GCCGCTTTTGTGGCTGTTTCCGCGAACTTAGC 117555 29 100.0 32 ............................. GGGATAAAGGGGACAAAGGCGATCAGGGTGTA 117494 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 117433 29 100.0 32 ............................. GGGTACCGGACAGGCCGATCACCTTTGTCTGC 117372 29 100.0 32 ............................. GTGAACATGATGCCTGGAGCACTATTTACAGT 117311 29 100.0 32 ............................. TCCCATTTATCAGGTGGCAGCGGCATTGATTT 117250 29 100.0 32 ............................. CCAGTGATAAAACCGCTGAAAAACGCCTTAAT 117189 29 100.0 32 ............................. GGATCAAACGGGTTACAATGCCGTCACTGAGT 117128 29 100.0 32 ............................. CGGTACCGAAAAAGAGTCCGTATTAAACGCAA 117067 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 117006 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCGCGTTGAGAGC 116945 29 100.0 32 ............................. CCAATGGAGAGGACGCGCAAAAAACTTCTCGT 116884 29 100.0 32 ............................. TTCCGTCCGGGCTGTCTGCGCCAATCGTAATC 116823 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 116762 29 100.0 32 ............................. AGAAGATATTAAACCCCATATAAACCCCACTC 116701 29 100.0 32 ............................. TGTGCCCGCTGACAATACCGTGGGTGTAGGCC 116640 29 100.0 32 ............................. GGCCGTATGGCTGCGCTACTGGATGAATTGAT 116579 29 100.0 32 ............................. ATCGCCTTAACTAAGTGCTCCGCTTCTGGTAG 116518 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 116457 29 100.0 32 ............................. GCGATGTCGTGTCTGCTACTCCCCATAATGGC 116396 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 116335 29 100.0 32 ............................. GGATCTTCATCGGATTAGACAAAGAGAAAACC 116274 29 96.6 32 ............T................ GTCAACGAGGGATTGAATTGGTGGTGTATTGG 116213 29 100.0 32 ............................. ATACATTCCTTACTCCTCGCACATTCACGAAT 116152 29 100.0 32 ............................. GAGCTGTATACAAACGGGAATATTCCGCTATT 116091 29 100.0 32 ............................. GTAATTACCGCACAGCGCATGATTTTAGTACG 116030 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 115969 29 100.0 33 ............................. CTACAATGTCAAAATGATGCCAGTTATCCTGGT 115907 29 100.0 32 ............................. AAAGAAGAAAATACAATGCTTGTAATGATGAA 115846 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 115785 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 115724 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 115663 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 115602 29 100.0 32 ............................. GCTGATAGCCAACCTGTAAGTGATCGTGATGA 115541 29 100.0 32 ............................. CTTTCTTCAGACATTTCTCCAACCCGGCAACC 115480 29 100.0 0 ............................. | A [115453] ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135850-135212 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOV01000015.1 Salmonella enterica strain BCW_4897 NODE_15_length_135849_cov_5.37658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135849 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 135788 29 100.0 32 ............................. GCAACCAAAAAGGCCGCGAAATCGCAGCGCCG 135727 29 100.0 32 ............................. GGTGTAATAATAATTGGGATAAATTCGTAAGT 135666 29 100.0 32 ............................. TGAATAATATTACTCCCTTTTAAGGGAGTTGG 135605 29 100.0 32 ............................. TGCTTCTTCTGGATTTTCTTTAGGTTTCTCAT 135544 29 100.0 32 ............................. TGACTGTATCAGCCGCAGCAAACGCACACTCC 135483 29 100.0 32 ............................. TTGCCAACCCACAGCAGTCCGTCAGTAAAATC 135422 29 100.0 32 ............................. GTTATTCTCAAAACACCGCTACGCCGGGGTGA 135361 29 100.0 32 ............................. ACCATTTATTGCAGAGATCGTAACATCTAACC 135300 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 135239 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCTGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //