Array 1 784888-786170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072524.1 Neisseria sicca strain NS20201025 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 784888 36 100.0 31 .................................... GTATAACCTAAATACGTAACCTTAACATCAT 784955 36 100.0 35 .................................... ATTATGTCCTATGCTATTTTGACTCATATGCTGGC 785026 36 100.0 34 .................................... TATTTACCTTTCTGCCTTGCGGCATTAATCCTTT 785096 36 100.0 34 .................................... AATGGCTATGATTTCATTATTGCAGAGTTTTGGT 785166 36 100.0 33 .................................... GTAGACACTTGGTTGAACAGAGCAACTGCAACA 785235 36 100.0 34 .................................... TGATAATCATGATTTGAATAGCCAAAGAGAACCA 785305 36 100.0 34 .................................... TACTGCTTCCCTGTCTAAAGGTATTCTTGTTTTA 785375 36 100.0 34 .................................... ACATGCACATACTTCAACAAAAACATCGGATTGC 785445 36 100.0 34 .................................... TCCCAGCGGTGAATTAATCAAAGATGTAACCAAA 785515 36 100.0 34 .................................... TGCTGCCTGTTTATGCATAAGCAGGAAAGTTTTG 785585 36 100.0 33 .................................... GGCGGACGAGAACTGTTTGGCGGACTATATGGC 785654 36 94.4 34 ....................C...........G... TCGGGTTCTTGGGTGCAGCCATACAACGCCATTC 785724 36 97.2 35 .......................A............ AGCCATTAATTCCATGTGATTTTCTTGCCCTTTAT 785795 36 97.2 33 .................T.................. CCAGCGCGCATTGGTGCTTTAATACCGTTTTTA 785864 36 97.2 35 ....................T............... CGCGACCCAAACGGGCATAGGCTTCGTAAGGTAAC 785935 36 80.6 35 ...A..........T...........TCT.....CT TTTCAGACGACCTCAAACCAAGGTCGTCTGAAAAT C [785966] 786007 36 77.8 20 A.T....AT.C.A.......C..T............ GCAATCAAATTAACAAAAGT Deletion [786063] 786063 35 86.1 33 A.......-T........T.C............... ATGTAGGCTTTACAGGCAAACTCTTCCAGTTCA TTT,TT [786067,786072] 786136 35 77.8 0 ...A...A..C.........C...-.....A..A.T | ========== ====== ====== ====== ==================================== =================================== ================== 19 36 95.2 33 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCGTAAAAACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCGAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTGATCGACCAAAGCCTCAACATGGGCAAAGTACGCCGCGTCCTGATTTTGTCGCCCGTCATTCAAACCAATGCCGGTTGGCAAAAATGGACGGAATTCGAGCGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCCGCGACAAAGAAGCGCTGAAAGCCCTGACAAGCTGACATCGAAGTCTCTTGACCATGGAAACGTCGTCTGAAAACGTTAAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGAAACACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGGAAAATACTAACTTTTCTTAACCATATAGAAGATTGAAAATAATGAAATTTTTTGACCGAGTGCA # Right flank : TCAAACAGCCTTGATGGTTCGTTCCATCAAGGCTGTTTTTGCGTCGGGTGTATTGTCAAGCTGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACGGTTTCCTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCGGGCGAAAGGCCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGTGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGTTCGTGCCATGAAAGCCGGGGCGGGACGCCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAGTGCAGATGGGCAAGCGTCAGATAGCGGCGCAGGAGCTGGCGCAGGAAAACCGCCTGCGTCAGTTCGGTTTCCCGCAAAATCCTGCCTTTTTGCTGAATACGCAGAGGCGTCAGCAGCTGAATATGCGCTTGGGAGGGATAGCGTTCGGGCAGCCTGATATGGTTGTCGTGCAGCGCGATGGGG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 791186-789403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072524.1 Neisseria sicca strain NS20201025 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 791185 36 100.0 34 .................................... AGCTGTCCCATTGTTCTTTGGTCGGTGCGTCCCA 791115 36 100.0 34 .................................... TTACTGAGCCGCTGACAAAAAGCGGCTCAGTTTT 791045 36 100.0 34 .................................... TTGCCGCAAAGGGAGAGAGTTCCACCACTTATGC 790975 36 100.0 34 .................................... TATTCTTCCGGCTTCAAAATGAACGGGTTGCTTT 790905 36 100.0 33 .................................... GCGCACAATCTTCCCTTACAATCAGCATTTGAT 790836 36 100.0 34 .................................... TCTTTCAGGCGGTTTGATATTTCCAATGCCATAT 790766 36 100.0 35 .................................... AGAGATTATTATGAACGATACAGCGACACAATGCA 790695 36 100.0 34 .................................... TAATCTTGACACCCCGTCCCCCACTCGGGCATTC 790625 36 100.0 34 .................................... ACCTAATTCACCATCTACCAGACGACGTGGATCT 790555 36 100.0 33 .................................... GTGGTCAGCACGCGGTAAACATCGGTATGCTTA 790486 36 100.0 34 .................................... ATGAACGGGAGATTCTTCAATAGAGAGTTGATAA 790416 36 100.0 35 .................................... CTGAGACTGCTCACGTTTAGGACGCAACTTGATAG 790345 36 100.0 34 .................................... ACCAACTTCACCGCGTTTTGCAGCCTCTTTATAA 790275 36 100.0 35 .................................... TGAACCGATTTTTTCGCTTTCAGCCAAGTCTTTGA 790204 36 100.0 36 .................................... TTAAGCAATTATGCACATTATTACGCTCGCAAAATG 790132 36 100.0 33 .................................... AAATGAATCAAGTGTAGTATAGCCGTGTTTTTC 790063 36 100.0 34 .................................... GTTAGCCAATAACCAGAACCACCAGTCGTGCTTG 789993 36 100.0 35 .................................... GCACGTATTCCGCCCATTCATCAGGGGTTGGTACA 789922 36 100.0 35 .................................... CCGGTCGGCTTGATACCGTTTTCAGCAGCGATGGC 789851 36 100.0 32 .................................... TTTATTGCCGTATTGGTCATGCACACGCATAC 789783 36 100.0 33 .................................... ATGATCCTTTATCCATTACACCTAATTGGTTAA 789714 36 100.0 32 .................................... GTTAAGTGCTGACGTCCCGCAAATCTCAGTAA 789646 36 100.0 34 .................................... TGCATAGGAACTTCCTTGTAGGTGTCGGTCTCAG 789576 36 97.2 31 ....................C............... TTTTTGAGCCGCTCGGTGATGCTTGTCCTAC 789509 36 94.4 34 ...................GT............... AACGGTGTTTCCGACGAATAGACATAAACCGTTG 789439 36 72.2 0 A................T.GC.....TCT....TCT | C [789405] ========== ====== ====== ====== ==================================== ==================================== ================== 26 36 98.6 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : GGCAAGAACGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCCGCAGAAAGCCCCGATTTCAACGCGGCAGAGAAAAAAGAAATTGCTGACGCGTTTGCCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGACAAGCGCGGCAAAGAGCTGAAACCCATCCTGGCGAAGCTGCGCGGCGAATAGATTTTCGGCTTTATCGAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACGGTTAAAAAGCGTTGTCGAATGCAAAGCACACGGCTATAATCCGTATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCTAACTTTTCTTAACTATATAGAAGATTGAAAATAATGAAATTTTTTGACTGCGTGCA # Right flank : TTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTCGCGCTTACAGTTTGCCCACGCCGCCCAAGATGATGCCTTCGGGCAAGGCTGGTTTGCCCAGTGCATGAATTATGCTACCGTTGGGCAGGGGATAGCAGCGTAAATTGTCCTGCTTGGCGTTGAGCATTTTGCAAAGTGTTTCAAAGCATTGCCTTGCTTGATCACTGCTGCCGATGTGCAGGAAAACGCTGTTTTGCAGAGGGATGGCGTGCTGTATTAAATAGCGGTGTGCTTTTCGCAGGCGGCGAGGGTCGGCGATGTCGTAGGCGATGAGGTGGCGCATTTTTATTCTAAGGTGGTAAGTCCGCTTAATTGGATTTCAGGCTGTCCACTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 1096555-1092464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072524.1 Neisseria sicca strain NS20201025 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1096554 33 97.0 33 T................................ GTCAGTCCGTTTGCTGCTTCGATGTGTGTAGTA 1096488 33 97.0 32 T................................ CTGCATTTTGCTGATATGGCAAAGGATATCCC 1096423 33 97.0 34 G................................ TTCGTCTTCTTCAATCTCTGTAATTCGGACGGGG 1096356 33 97.0 36 G................................ TTGTATCAGTTCGGCTTTGGTAATGTTGCCTCCGAG 1096287 33 100.0 34 ................................. CTTTATAGCCCACTATCACACGCAGATAACCCCT 1096220 33 97.0 34 T................................ TAGTTATCGGCTGCCACGTCCCGGTTATTCAGGA 1096153 33 97.0 34 T................................ CCCTGCCCTCTAAACGCAATCCTAGACGCTCCTA 1096086 33 97.0 33 G................................ CAAGAGAAAGCCAAACGCATCGAAGCAGTGAAA 1096020 33 97.0 34 A................................ GCCGCGCAGGTCAACATCGGTAACGTGATGGTAC 1095953 33 97.0 34 T................................ ATGATGGGCGCGGGCGGATCGCCTGACGTTTGGA 1095886 33 100.0 32 ................................. GTCATATCCTCTGCCAAAACAGGGACGACCGT 1095821 33 97.0 34 G................................ ATTTTTGGGAGCTTTAAATGAACGTGAATCAAAT 1095754 33 100.0 32 ................................. CAGTCGCCTGACAAAGAGCATACATGGGCGGA 1095689 33 100.0 36 ................................. CAGCCGTTCGCGGCGCGGTTGCCTACGCTTGGTACT 1095620 33 97.0 35 G................................ GACAGCAGCCGATACCCCGTTAAGCAGGGTTTGGA 1095552 33 97.0 33 A................................ AGCATTACACGCCTTTCCGCTTGTACTCATTGA 1095486 33 97.0 34 G................................ TTGCAGGTATCCTGACGCTTGTTGCAACCCGGAT 1095419 33 97.0 34 A................................ ATCTTGGAATGGAAATTCTGGCTTGGGTTCAGGA 1095352 33 97.0 34 A................................ CCTATCCGTAATCCGACTTTGAAACAAAAAACCG 1095285 33 97.0 33 A................................ ATAGTCTTATTGGTGCTCGTATTCGGTATCAGG 1095219 33 97.0 35 A................................ ATACCTTACGCGCCGAATACGGCGAGGATGAAACA 1095151 33 97.0 34 G................................ TGCTTTGAGTTCGAGGACGTCGCCCAAGCCCGAA 1095084 33 97.0 33 T................................ CGTATCGTTGTAAGCCGTCAACGGCTGACGGTC 1095018 33 97.0 32 T................................ GATGGTTTCGGTGCGGTATAGCGGGTTGTCGC 1094953 33 97.0 32 T................................ GCCGTTATCTTCTGCCTTGCTAATAGCTTTGG 1094888 33 97.0 34 T................................ ATAGCAGTACCCCTTAAACGACGGGCAACAAAAA 1094821 33 97.0 32 A................................ CCCGTTGGCGATTGTTCCCTAAAAATAACGTT 1094756 33 97.0 34 A................................ TTGCCTGCTGCCTGTTTATGCACAAGCAAGAAAG 1094689 33 97.0 32 T................................ TTTGGGCTTATCATCCTCTTTCGGCTTGTCGT 1094624 33 100.0 34 ................................. CTTTCTATCTGTTAAATAATCCTGCCAAAGCATT 1094557 33 97.0 33 G................................ GGGTTTATTACGATATACAAACCGTTGGAATCG 1094491 33 97.0 34 G................................ CGCAAGGATTTGATTCGGGCAGAAATCATATGAA 1094424 33 97.0 36 A................................ TTAAATCCTGTTTAAACCTGTTTTCAGACGACCTTA 1094355 33 97.0 33 A................................ CAAGTATCGGCAGTATCACGGTGAATATAGGGC 1094289 33 97.0 33 T................................ CCTTTATATCCCACAATCACCCGTAAATAGCCG 1094223 33 97.0 34 T................................ TAATAGGTCTTTTTCTGTTTCCGTGTTGAAAGAA 1094156 33 97.0 33 A................................ TCTCTAAGAAGCTCGCCTCTTTTTTCGTTGATA 1094090 33 100.0 32 ................................. AGGGGCAAAACCTCAAACCTGAAGACTTCGTG 1094025 33 100.0 34 ................................. GAGAGTATCGAAGTTGCAAACGATTTCGTCATAT 1093958 33 100.0 34 ................................. CAAAGATACCATAGACGTAACATTGATTACGGCC 1093891 33 97.0 33 A................................ TTCCAAAGATGACGGCAGGCATGATGTAGCTGT 1093825 33 97.0 33 A................................ CTGCCCTTTAATTTACATTATGACCAAAGCGGA 1093759 33 100.0 35 ................................. GTAAAGGAAAACATCATGAAATTGATGAACACTTG 1093691 33 100.0 32 ................................. TTGCCCAGTTCGGCGCGGATTTCGTCAGCGGT 1093626 33 100.0 33 ................................. AAAATCAACATTCGGGGAGTGAGGAATCAACAG 1093560 33 100.0 33 ................................. ATCGTAAACGTCCTTTAAAGGCGGCTGTTTAGT 1093494 33 100.0 33 ................................. TTCGTCGCTCCAAAAGACAGACTGTTCGGGCTT 1093428 33 97.0 33 G................................ AGCGCGTCTTGCGCTTTTGCCAGCTCGTCCGCT 1093362 33 97.0 32 G................................ AGCATCATCAGCAGGCGTTTCATCGGCTTTGT 1093297 33 100.0 33 ................................. AGCCGATTGTAAAGAATGACGGTTCGCTTGATG 1093231 33 97.0 34 A................................ CGGATCACCCGCCCATCATTCGCCACCGTTGACG 1093164 33 93.9 34 G............A................... TACCATGAAACATCCAGCAAATCATTAGTCGTCC 1093097 33 93.9 36 G............A................... CCAAAAGCATACATCTTGAAAGTGTTCAGGGATAAA 1093028 33 93.9 32 G............A................... TGATGAAAAATATCAGGATTTTGTAAAAACCA 1092963 33 93.9 34 A............A................... CGCATAACCTTTGTAATATATGTTTTCGCAACCG 1092896 33 93.9 32 T............A................... TGTAAGTTTGAGCAAGGAAGAAGATAAAGGCA 1092831 33 97.0 34 .............A................... TTAAAAAGCATTTCGAACACTATGTCTGTGTATA 1092764 33 97.0 35 .............A................... ACCGTATAGCTCAACCGTTATGGCTAAACCTGCAA 1092696 33 97.0 34 .............A................... AAGGCGAAGGTGGCGCACCCTGTACACGGCAGAC 1092629 33 97.0 35 ......T.......................... CACGCTCGCTCTGACACCCCATCAGGACGGACAGA 1092561 33 84.8 32 T........T...A..T..T............. AGACGACCTCTACCGTACTGGCGATTGATTTT 1092496 33 84.8 0 G.T..........A....A...C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 97.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTATTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGATAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATAAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAGCCTGATGGAACAAGGCTTTTGAGAGAGGC # Right flank : CTGTAGCCGAGGGAGCAGATGTAGAGGCGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGACCAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTAGACGATAAGATTACAGGTTTGGTCAATAATC # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //