Array 1 268638-269703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGGX010000002.1 Escherichia coli strain PLATE1_D8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 268638 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 268699 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 268760 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 268821 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 268882 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 268943 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 269004 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 269065 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 269126 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 269187 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 269248 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 269309 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 269370 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 269431 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 269492 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 269553 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 269614 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 269675 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295403-296406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGGX010000002.1 Escherichia coli strain PLATE1_D8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295403 29 100.0 32 ............................. CCAACTCAAATTTACGGGGTGAAAGTTACGCC 295464 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 295525 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 295586 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 295647 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 295708 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 295769 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 295830 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGTTGGTGGTTTA 295891 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 295952 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 296013 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 296074 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 296134 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 296195 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 296256 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 296317 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 296378 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //