Array 1 230039-230357 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOBK01000001.1 Pseudodesulfovibrio indicus strain DSM 101483 Ga0244724_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 230039 30 100.0 42 .............................. CCAAAGAGGCGCGTTGTTCGTTACGCCGTGCGGAGTGAGATT 230111 30 100.0 43 .............................. CCAAAGAGGGGGGGGCTCGCTATGGCGGTGCGGGGGCTGGGGT 230184 30 100.0 43 .............................. CCAGAAGAGGTGTGTTGTTCGTTACGCGGTGCGGAGTGAGATT 230257 30 100.0 41 .............................. TCATAGGAGGTGTGTTGTTCGCTTTGGCGATGCCGGGGTGG 230328 30 86.7 0 ............T......C.......AT. | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 97.3 42 CGCTGTTTGAGGCTGCGCCTCAAAGGCGCT # Left flank : CCAACTCCTTCACCAACCAGGCCCTGGCCCAGATCGACCTGGCCCTGAACGACTACGAGCCCAAGGTCATGATCCTGCCCAAGAAGCTCGACGAGGAAGTCGCCCGCCTGCACCTCGCCCGCCTCGGCGTGAAGCTCGAAAAGCTCACCAAGAAGCAGGCCGACTACATCGGTGTGGACCCCGAAGGACCCTACAAGCCCGACCATTACAGGTACTAGCCTAAAACGAGACCCGATAAAAAAAGGGGGGAGCCGAGCGGCTCCCCCCTTTTTTTATCGGGTCTCGTTTTAGGGGCGGCGGCTTCCGATAGCGGGCCATTCGCACATTTTTTCCGGGGGGCTTTCATCCTCACGTAGACGGCTACGCTGCGGTGAAAGCCCCCCGGAAGAAAATGCACGCCTGACCCACTCTCGAAAGCCTCACTGCTTACGGACGCGGAGGGGGGAGCCGCTTCGCTCCAAAGAGGGCCGCTGTTCTTTTCGCCGTGCGGGGGAGAGAGC # Right flank : TCCAAGGAGAGGGGAGGGTGGCTGCGGAGGGGGTGTTTTTATACAGGACGGGGGGTGGGGTGGTGTGATAGAGAACCGGGCATGCGCGGAGTCCGTCCTCATATCCTCCTGATTGTGGTCCTGGCCGTCCTGCTTTGGAGCGGGGCGGGGTGGGCCTTGGACGTGGACGTCAAGGTGTCCAGCTTCAAGATGGACCTGGGGCTGGAGTATGCGCCGGGGAACCTGATGGACGGGGACCCGGCCACGGCCTGGGCCGGGGGGAGCATCTCCTCGGGCGAAGGGCAGTGGATGGAGTTCTCCTTCGGCATGCCCGTGCGGGTCACCCGGCTCGGCGTGTACAACGGGCACCAGGGCGAAGGGCAGTTCGATAAATTTCGGCGCATCCGGTCCGGCCGGGTGGTCTATCCCGACGGCACGGAGTTCCCGTTCTGGCTGCGCGACGAAAAGGGCGAACAGATCATCGAATGTCCGGGCAAGCCCTACAAGTCCCTGCGCATCGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTGTTTGAGGCTGCGCCTCAAAGGCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.00,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 254251-252958 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOBK01000002.1 Pseudodesulfovibrio indicus strain DSM 101483 Ga0244724_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 254250 32 96.9 34 ...............................A CAGATGGCGCGACGGCGGCCGGTATTGCGGGGCT 254184 32 96.9 34 ...............................A ATCTTCGGCCATCCATGTCGTCTCCTCATCTGCC 254118 32 96.9 33 ...............................A ACTTTCAGTCACAGGTAAACCACATTGCCAGTT 254053 32 96.9 34 ...............................A ATTATCAGGCCGAAGGTTGAACTTGACGAGAGTG 253987 32 96.9 36 ...............................A CTGCACGTCGAGGAAGGTTGCAACTCCGTAATCGAA 253919 32 96.9 38 ...............................A CGCACTTTCCATGGCCGCCTTGATATTCTTGCGGCCAA 253849 32 96.9 33 ...............................A TGCACGGCAATCCGCCGCGCGGCTGTCACAGCA 253784 32 100.0 34 ................................ AGGCGCATTGCAGAGATTGTGGCGGACAACAACA 253718 32 100.0 35 ................................ CATGCAAAACTGGATTTTATATGCGGACATCAAAT 253651 32 100.0 35 ................................ CAGCCCTGCGCGTCACAGAGCGCGGCCCACTCGAC 253584 32 100.0 34 ................................ CGGTTGGGCGGTTTGGGCTGCTGGTTGACTACCC 253518 32 100.0 34 ................................ ACTTATTCTGCTTGATGCGCTGGAGGATTTACAC 253452 32 100.0 35 ................................ TCGTCTTTTCCCCGGGCGCGGCGGGCGTGCCGGAG 253385 32 100.0 34 ................................ TTGAGCTCACCTTTCATGAGTCTGGCCAGGATGT 253319 32 100.0 35 ................................ CGCTACGTCATTACCAACCTGGGCGACCCGGTGGT 253252 32 100.0 34 ................................ CTCCGCTGCTTGGCCCGCATCTTCCGGGCCGCTT 253186 32 100.0 33 ................................ ATCGGTCTTGCCCGCCTCGACGAACTCTTCGCT 253121 32 100.0 33 ................................ TGTGCAGTTGCTCATAATTGCCTCATGCTTTTG 253056 32 100.0 35 ................................ CCCTGACCGACCAGCAGAAGCGCAAGGTTTTCGGC 252989 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 20 32 98.9 34 GTCGCCCCCCACCCGGGGGCGTGGATTGAAAC # Left flank : GGATATCCGCCGTTTTTTTGGAAGTGACCCATGCTGGTGCTAGTGAGTTATGACGTGAGCTTCGAGGATGAAGGCGGCAAGCGGCGGCTGCGCCGCATTGCCAAGGTCTGCCAGGACTTCGGCCAGAGGGTGCAGTATTCGGTATTCGAGTGCGTGGTTGATCCGGCGCAGTGGACGCGTTTACGTCACCGGCTGCTGGAAGAGTATGACGAGGAGCGTGACAGCTTGCGTTTTTATTTTCTCGGCAAGAACTGGCAGCGCCGGGTTGAGCAGCACGGTAGCGGAAGCAGCTATGACCCGGAAACAGACACGTTGATATTGTAGCGCGAACCCCAAGCGGTTGGAAAAATCCAGGGAGGTTCGCAACCCTTGGGGTGTCAAGGATAACAGCCCGTTGCGCTACCGCTGATGAGTAAGCGAGCCTTCGGGGCCTTAAGCGGACATGGTTTCGCGGACAAACGGCTGAGGAAGCCCGCGCCGCAAGGCTTTGCTGCCGCACT # Right flank : CCGGCCATGGCGCAGATCGCGGAAAGTCAGGCCCTCAATCTGGGCGGCGGCGAGCGTCCTTCTCATTGCAATGGTGATGGCGTTTGGAGTCATGCCGAACACCGAGCCGGTAATATTTCGAGGGATGCTCGTCAGCACGGCCAGGGCGTCGGGTGATAGTGGGACTGTTCGCTCGGACTTATTTTTGGTGCTTTCGAGGTAGAGCGTCTTCGTCTTCAGGTCGACGTTTCCTCATCGCAAGCCTGCGATTTCCTCACGGCGCATCGCCGTTGCCAGAGCGAACTGAACAAGAGCTCGGAACTTGTCGCCACAGGCGGCCAAGAGCCGTTCCTCTTCGCTCTTGGCGTCCTCGACACCCTCAGGAGCGGGGTAAATGTCGCCGGGTCCGTCCGCCGGTCAGTTTGGGCTTGTTGCTCGCCCTTTTCACGGGGTTTGCGAGGCTTTCCGTACTCCAATCTGAGGCGACGACTTCGAAGAGCCGTGAGAGGATAGCAAGGTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACCCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //