Array 1 292430-290220 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCS01000003.1 Parabacteroides merdae strain BIOML-A24 scaffold3_size383205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 292429 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 292364 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 292298 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 292232 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 292166 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 292099 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 292033 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 291967 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 291901 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 291836 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 291770 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 291703 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 291636 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 291570 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 291504 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 291438 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 291372 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 291306 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 291240 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 291175 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 291109 32 100.0 33 ................................ AAGAGAAGTATTGCCTAAAATCTCATCTCTACG 291044 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 290978 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 290913 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 290846 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 290780 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 290715 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 290648 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 290583 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 290518 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 290451 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 290383 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 290317 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 290251 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 299922-298110 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCS01000003.1 Parabacteroides merdae strain BIOML-A24 scaffold3_size383205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 299921 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 299855 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 299789 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 299723 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 299656 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 299591 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 299524 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 299460 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 299393 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 299327 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 299262 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 299197 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 299131 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 299063 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 298997 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 298931 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 298866 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 298801 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 298735 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 298669 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 298605 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 298541 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 298474 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 298410 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 298344 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 298277 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 298212 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 298141 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //