Array 1 2035-807 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000192.1 Paenibacillus forsythiae T98 S9_contig00882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2034 32 96.9 34 T............................... ATAGATGCAATGCCAGCAAAGTCCGGGTTATCTC 1968 32 100.0 33 ................................ AAAAAATCGCACCATATGCGGTAGATGATTATA 1903 32 96.9 33 T............................... TATTTAGAGAAAGGGTGAAGAGGATGGAGTTTG 1838 32 96.9 34 A............................... ATTTTCTAAACCGACCAGCACATCGGTTATTTCT 1772 32 96.9 34 T............................... ATGCCGCAGTAATTGTATGGCATCCGATAACTTG 1706 32 96.9 35 T............................... AGTTTGAGCGCCGAATGGCAGCTTGGGTCGAACGC 1639 32 100.0 34 ................................ GTGTAGGCGACGAGGTAGCGTTGTGTGAATGGGA 1573 32 100.0 33 ................................ ATCGATGATCTGAAGCTTACTGAAATCAAGCGC 1508 32 100.0 36 ................................ GCGTTTGCATCACTACGTCTGTGCCGGATTCCTGCA 1440 32 100.0 36 ................................ AGCGAGATCCAACTATTTCCGGACCGCTTGGATCAG 1372 32 96.9 33 ........T....................... CGAATACACCGTGGGCCAATCAGTCCGTCACAA 1307 32 100.0 36 ................................ TGTTCGGGATTGCGTGCGGAAACTCCGTAAAATGCC 1239 32 100.0 35 ................................ ATCATATTGGCCACTTGGGTCGTCATCAAGTACAC 1172 32 100.0 33 ................................ CGATATCGGTGGTGCTGTAAAGCGATTGTTTAC 1107 32 100.0 36 ................................ GACGCCGCGCCGCCAGCGCCCGGCCGACAGCGGAAT 1039 32 93.8 35 ............AA.................. ATTACGTCGGCTGCGGTTCCTTGAATTGGCGTATT 972 32 96.9 34 .............A.................. ATCTTGGTATGTGGCGTAACGTCCGGCTTTGTCA 906 32 93.8 36 .............A......A........... GTCATCCTTGTCAAATTGCGTCAAGTCATATTTCTC 838 32 87.5 0 .....C....A.....T.......T....... | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 97.5 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : AGAAGCTGAACGCGGAGCTTGAACCTTATTTTGAGAAATTGAACGCGGAGGGAGCCGGGAATGGGGGCGTGAAAGAAAACGGGCAACAGGCGGACGACGCCTGGAAAGAGGTGCTGGCCCATGCGGAGCAAAACCTCAGCAGTGCGGATCTTGCCAAAGTAAAAGGAATCATCGGCGAGATTCAAAAGCTGCAAGCCCAAGCGTCCCGGTCGGACGGCAGCGTTCGTGCCTTTACGAACGAGGAGAAGGAGCAATTGAAGGAACTGATTCGGCAACTGGAACCCTACCAAAGTCAGCTGGGAATTATGCTGAAGCCGGTGAAATAGAACAAAGGTGCGAACCCCAAGCTCCCATAAAAACCCCGGGGGATTCGCACCCCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGTAGGAAGCCCTTTTTAAAGAGCCGTTTTTAAGAGGTTCGCACTAAAGCGTTTGCAATTCCTTGCGGAGCAAGGGATCGCAGCGGGCGC # Right flank : TAAACACTAATATGAAAAAGCACCGAAAGCTCCGCTTTTACAGCAGAGTTTCGGTGCTTTCGTTACCTAGGGGAATATTACTCTTTTGCGCGAACCTCAAATAAATCGCTCGGGCTGATGTCGAAATATAAACATAACTTCACGATCAGTTCTGCCGAGATTTTTTTCTTCTCCATGTTGGTGTTATGCATCAATTCCATGATGGTTGTTCTGCGATGCCCTATCTCTTTTGACAATCTCAAAATTTACAGATTACCATGCTCCTTCAAAATCTCGTCCAGTTTGCAGTGAAGTGTATATTTGTTAAATTCCATTTCGGTCCTCCGAATCAAAATGTTACACTACAAATGTGCATGTGGTATATTGTGGATGCAAGAGTTGAACTTTAAAAGTGCAATTGTACAAAGAAAAACCATTCGCAGTCAGCTTGCTTTTTGCAGATAGATATTTTTAAAAAATTCGGTGAGGATGCATATGCCCAGACGTCGCCCACTATGATC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 398-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000184.1 Paenibacillus forsythiae T98 S9_contig00875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 397 31 100.0 36 ............................... ACATGCTCGGCAACCCGCGCAGCCGGAATAAAGCTG 330 31 96.8 34 ............................T.. AATCATCACAATACTATGATATTATTATTGCAAG 265 31 100.0 36 ............................... ACTGACGTACTGGAAGGCATGTATAACAGGTTGAAG 198 31 100.0 39 ............................... TTAAAAACACAACGGTCGATTACAACGTTGTCACTGTGG 128 31 100.0 37 ............................... CCATCCGGGCGGCAGCGGATCTTCAGGTGCCGCCTCG 60 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 6 31 99.5 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : GCGTGTCAAATGATGGTGCTGATTACGTACGATGTGGAGACAACAACACCGGAAGGGCGGCGCAGATTACGCCGAATCTCCAAGCACTGCCTCAATTATGGACAACGGGTACAAAACTCGGTGTTTGAGTGTTTGGTTGACCCGGTACAATATAAGCAATTACGCCAAAAAATCGAGGCGGAAATGGACCCTGCCAAAGATAGCTTACGCTACTATATGCTTGGGGCCAATTGGAAAAAACGAGTGGAGCATGTCGGCGCTAAAGAGGGCTATGATCCGGAGGGGATATTGCTCCTGGATTAATTCCAAGTGGGACGATGAGGATAGGAAAAGTGCGAACCCCAAGCTCACATGAAACCCTGGGAGGTTCGCACTCCTTGCTGGGCAAGGGATTAAGGTGTTTTTAGCTTCAAATGTGGCGTTGAAATCGCCCTGATATTGGAGGTTCTCACTTTTCGTCCTTCGATCCCAAGTGGGGTAAGGGTTTTTGGGGGTACCTG # Right flank : TGAGGGAGTACAGATGAGTTTCGAAGATGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10126-9555 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000184.1 Paenibacillus forsythiae T98 S9_contig00875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 10125 31 100.0 37 ............................... CTTGATTTTGTATTGAACACGTCCCCAGGTAGGGCGG 10057 31 100.0 37 ............................... GCCAGATGGCCGGGATACTGGCGGAGGATGTCTGGTG 9989 31 100.0 36 ............................... CCACGTACTCCACGTAGCTCCAGCGTCGGATGACGG 9922 31 100.0 37 ............................... TTATTGGATGACATATATCTGGAATGCATCTTAGATG 9854 31 100.0 36 ............................... ACTCAGTACGGTCTCGGAAAAGTTTCCGGTGTCTCG 9787 31 100.0 37 ............................... TTCTGCATTTTCGGAGCGCCGGTCAATCCGCTGCGGG 9719 31 100.0 37 ............................... AGGAAGCAGGTCTCGGAACTCGGGAAGACATGGTTGG 9651 31 96.8 35 ....................C.......... GCTTGCAGGCCGAAGCCTATGACGAGGATGCGCCG 9585 31 80.6 0 ....T.T..A....A.A............G. | ========== ====== ====== ====== =============================== ===================================== ================== 9 31 97.5 37 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : GA # Right flank : TGGCGTTAGGGAAGTATATGCCCAACTAATGCTTGTGGCGTTCCCTTTGCGAAAATATGGATTAAAATAATAAAATTGTTTTATGAGAACTGGCTTCAATAATGAGTTTTCCGGCAAGAGGCTTATTATTTATAACGGTCAAGTGACCAAAGGGGGGGTAATTGAAAAACTGCATTTATGCTCAATGCATTTCTAGCGAGGAGAATAGTCTCTTTCGTAATTGAAAGTTTCTTGGAGTAGGCTTTATAGGCATCCATGGCTGGAACTTTTACGTCAAGCCTTCTCTTTTTCTTGATTTTAGCTCTAAACTAGGTTGACCTCCAGATAACTTATCTGGAGGCCGTGTCCCTACAGAAATAATAACTTTTTAGATCCCATGATTTCAATCCACGCACCCGCACGGGGTGCGACAATCAGCTCGTATTTTATTTTAATACGTATTTCTAAATATAACAATTTTATTATTGAGAGCTTTAGGGAGGTGTAGATACTATACAACT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6016-4985 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000220.1 Paenibacillus forsythiae T98 S9_contig00878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6015 32 100.0 33 ................................ TGCCAATTCCGCAGGGTAAGTTGCTTCGTAGCT 5950 32 100.0 35 ................................ CATTCCGCCTGACACCAAGCCTTTCGGATTTTGGG 5883 32 100.0 36 ................................ TTAGAACGGCAGGTCTCTAGTTGGTGCTGGAGTACC 5815 32 100.0 36 ................................ CTTGTACGTTTGCCGCATTCCTTTGCTTCCAGCCGA 5747 32 100.0 35 ................................ ACAAGCCAAGCGGTAGACGGACAAAAGTACGTGAG 5680 32 100.0 37 ................................ GTTTCAGTTGCCGATCCACTTGCATTACGATTCCCTT 5611 32 100.0 33 ................................ CGTAATGTTGCTGGAATGCATCAATCGTTCAGC 5546 32 100.0 35 ................................ CTTTTGACGGCTCCTGATAATGTTGATAAAGAAAC 5479 32 100.0 34 ................................ CGCGTTATTGAACATTCTCACGCCGCAATCTCCT 5413 32 100.0 37 ................................ TCATCCTCCCAATCTCCGCAGTCGGGGCCGTCACAAA 5344 32 100.0 33 ................................ TGGCCGCTCCCAGATATTAAAATAATATTCAGT 5279 32 100.0 34 ................................ AACCTGGAAGTGAAAATCATCGAGAAGGACGCTA 5213 32 96.9 36 .......................A........ AGCATCGCCGCCAAGCAATCATAAACCATCACCCAA 5145 32 100.0 35 ................................ CAAACTGTGCCGGAAATATCGTTATAGTAGCAGAC 5078 32 96.9 31 ...............................C CTTTGGTGGGGAAAGGGTGTAGCCTCTCCTT 5015 31 68.8 0 .....C.C..A....GA....CA-....T..C | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 97.7 35 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Left flank : CTTTGAATTCAGGCTCGGATTTATGCTTCTATTGTATCGTTCTTGTCGGTATTTCACTAATAGGGCGAATCTTTACAAAGTGCGAACCTGAAGCGCACATGAAAATGCCGGGAGGCTCGCGCCTCTAGGGCCGGGAACCCTTGTTTTTTTGAGGTGCGATTGCTCCCCGAGCGGGATCGTGGGTTGAAATATTGTCGGAAATGAGGTTGTGGGAATGGAAACAGGCTGGCGGGACCGCTGAGCTGGTAATCTGTTTCAGAGAGAGCGCGGGAAGATCCCAGGCAAACAGCAACCTGAGCATGCTGCTGCCCATGGCTGTATTGTTAGGTTTGGTGCGAACCCCAAGCTCCCATGAAAACCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGTAGGAGTCCCCTTTGAAACGACCATTTTTAAGGGGTTCGCACTAAAGCGTTTGCAATCCTTTGTGTAGTAAGGGGTTGCATCGGATGCT # Right flank : CCCTTACAAAACCGTCCCACAGAAACAAAGCTTCGCTCCACCTCATTTAAGGACTAATTCTCTGCCCGCCTGACGTAAATTCAGGAGGGCAGAGCTTTTTTTAAACCTTCACTCTTGTTCCATTCCTCCAAGCCCCGCTTGTCACGCCTGTCAGCATATTGCGGTCAAGTCCTACATAGACATGTACTAATCACTGCATTCAAAACAGGTTAAGGGGATGATGTCATGCGCCGGATAGCATGGGTACTCGCGATCATTATGAGCGTTACCCTGATTATGACGGGCTGCGGGAAGAAGGACTCCGCGTCTGTGGTCAAGGATTTGAACGACGTGGCCGACAAGCTGGAGAGCAAGGCGGGAGCCTATCAAGGGGAAGGGACGATGACCCTCTACACCGGCGAGCAGCCTCAGGAGTACAAGGTTGAGGTATGGTATAAAAATCCTTCCTACTACCGCATCAGTCTGGCCAGTGTGCAGAAGAATGTTACGCAGATTGTGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8832-8061 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000220.1 Paenibacillus forsythiae T98 S9_contig00878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8831 31 83.9 37 ....T.T..A....A.A.............. CGAAAACGACCGCATGTAATCGGCGGCCGGGCCTCGG 8763 31 83.9 35 ....T.T..A....A.A.............. TGCCAATTCTGCTGACCTTCAGCAAAGTTCTGCTG 8697 31 83.9 38 ....T.T..A....A.A.............. CTCTTTGACTGATCTTTTATTTGTGGATAAGCAACCTG 8628 31 80.6 35 ....T.T.TA....A.A.............. GAATGATTGAGAGTAATGGGGTGGTCACCGTATTG 8562 31 83.9 37 ....T.T..A....A.A.............. CACCAAGCGACTACGTAATCGGTGATGTTGCCGCCGG 8494 31 90.3 35 ....T.T..A..................... AATAACGCTACCGATTTCATAGTCATGGTGTACGG 8428 31 100.0 36 ............................... ATTTGCATCCGAAGTGGCGGTCCCCGCCAACCCGAG 8361 30 96.8 38 .....-......................... TCGAACATGAACACGCGCGGGTATCCTCCGCTGTCCAG 8293 31 100.0 37 ............................... CATCGGCTTTTTTTGCAAGCGTTCCGCTGACGGCAGG 8225 31 100.0 35 ............................... CGTGCTGAACGAGTATGACGAGGTGTATTGCCCTG 8159 31 100.0 37 ............................... CTCAGGACCCTCAGACGAATAACGGACTTACGGGGCG 8091 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 12 31 91.9 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : GA # Right flank : TTCAGTGTATCCAGACCGTCCTGACCAGAAATGGAGTTTATTTCCATGTTGGGTTGTAGTTTGAAAATGCTGTTTCATGCGGTATTTATGAGCTTCACCTTCTGGTCACGCCCCTTTCGGTGGCGAGAATTATTTTTTATCCCGATTCATCTCTGCTCAACTGACCTATCAGCCTGAAAATAACTGGAAATCACTAACGCGAAGCGATAAGATAGAGTTGCTGGACTTGTATCTACTATTGATAAATCATGAATTGGGGGCGTTTCACAGATGAAGATTGCGGTTGCGGGGGATCATGCGGGCTTTGCCTTGAAAGAAGAAGTAAAGGCTCTATTAACCAGCCTGGAGCATGAGGTTGTGGATTTCGGAGCGCATAATGAGGAAGCTTGCGATTTGCCCGATTATATCTATCCTGCGTCATTGGCTGTGGCTGAGGGGAAGGTGGACCGGGGGATTTTTATTGATGGTGTTGGCTATGGAAGCGCTATGATTGCTAATAA # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : CTCCATGCGAGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1197-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000308.1 Paenibacillus forsythiae T98 S9_contig00876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1196 31 100.0 34 ............................... GCGATTAGATCGAGGCGTCCTGGCGAACTTAGAG 1131 31 100.0 36 ............................... CTGGCTTTGCCCCTTTGTGATCTGCTGAAGCAGGTG 1064 31 100.0 37 ............................... CAGAATTACTTTGTCGCCATCAGCGAAGAATTCAATG 996 31 100.0 34 ............................... AATTATCCCGTTTCATGATGAATACGAACTATTG 931 31 100.0 34 ............................... TGGAGTGTCGACGGGGTCTGCTTCTGGAGGCGGG 866 31 100.0 37 ............................... CGGCTGCTCCTCCGGGATGGGATGATCCGGGATGGAG 798 31 100.0 35 ............................... ATATCGGCCCGAGCAGCTTCCCCAACCAATTTAAG 732 31 100.0 35 ............................... AAGACCTCTCTGCGGCTCCTAAAGGCCGTATAATG 666 31 100.0 36 ............................... GTTCTAGCAGCGCCGCCGTAACATCAAGGTACATTG 599 31 100.0 36 ............................... TATACATAACACACACAATATGTCAAGGTATTTCGG 532 31 100.0 37 ............................... TTGTACTTAAATTGCGTTGCTGACGTGTTGGTCCAGG 464 31 100.0 36 ............................... TTCATTTCGTCATCCTCCTTGAGTGCTTTGTATAAG 397 31 100.0 35 ............................... AAAGTGAAGGTAAAGCCTGTTGCATCCGTAGTGAG 331 31 100.0 36 ............................... AGCAGCTCAGTCACTTGGTTGTTGTCCATGTTCTCG 264 31 100.0 37 ............................... GCCAAACTAGGCGCCGCTCCGTTCGACCTGGCGGACG 196 31 100.0 37 ............................... ATCCCGATTGCGTCAATACCATCAAGGAGATACAGCG 128 31 100.0 36 ............................... CTTTGGAGGATTTGTCGATTGAGAATGTGATGGCTG 61 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 18 31 100.0 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : GATTCATACCAAACTTGAGAAGATGACCCTAAGTCAATTGAAAGTCCAGGAAAAAGAAGGCAACAGCCAAGAAATTTCCCTGCTTGCGTTAACTTTTCAGTTGAACCAACTGCTGATGCTCATCAACAATCCGATCCTATTCCCGCATCAGGCGTATGCGAATATGTTCAATAGAGTTCCAATTCCGGATCAAAGCAGATTGTACAAGGAAGAAGCAAGGAAGATACGAAATGGGGAATCCCAGACACATGTGCAAACTCCAAAGGCTCCAAGATCCTTCCGCCGCAAAGGTTCAAAGGTTCAGTAAATGGAAGGCTGATCGTCTGTAAAAGTGCGAACCCCAAGCTCACATGAAATCCCCGGGAGATTCGCACTCCTTACGGGGCAAGGGTTTTCGCGATATTTTATAGTAGGAAGCCCCTTTTAAACAGCCGTTTTCAAGGGGTTCGCACTAAAGCGTTTGCAATTCCTTGCGTGGCAAGGGGTTACAGCAGGCGCTG # Right flank : TATTTACTTCAAGAATTTGATCCTCAGAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12907-9590 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000308.1 Paenibacillus forsythiae T98 S9_contig00876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 12906 32 90.6 35 .......C..G....G................ CCGGCATTGGGGCTACGCCCGCCGCCAGGATTACT 12839 32 90.6 35 .......C..G....G................ CTGGCCCGGATGGGGACCGGACATGTCGGCGTCTT 12772 32 90.6 35 .......C..G....G................ TTCTTTTGGCTCTGCTCTATACTAGCAAGCCAAGA 12705 32 90.6 34 .......C..G....G................ TTGTACCACTTACGCCAGGAGATATAGCCTTTCA 12639 32 90.6 35 .......C..G....G................ ATTATATGAAGTGGAAAGAAAAACACCAAATATAT 12572 32 90.6 35 .......C..G....G................ AGTTTACAGACCATCTCGCAGGATGAAGCTATTAG 12505 32 90.6 35 .......C..G....G................ CTGTATCGAAGACCACGCAGGCCCGGGGGCCGCTG 12438 32 90.6 36 .......C..G....G................ GCATTCTACTAAAACAGCAACGGACCCGCCATTTGC 12370 32 90.6 36 .......C..G....G................ CGTCTCATATCGGTATCCGGCTGCTCTGCGCTATCA 12302 32 90.6 34 .......C..G....G................ GCGATCTTATGGCATTTGATGCCAAAAACATAAA 12236 32 90.6 35 .......C..G....G................ ACTGGATGCTCAGCGTGAGTATAATTTGGCCTACA 12169 32 90.6 33 .......C..G....G................ CTCATCAGTCACATGACCCCAAACAGGATCACA 12104 32 90.6 33 .......C..G....G................ AGCAATCTCTTCAGGTGTAAGTCGAAGCCGTTC 12039 32 90.6 35 .......C..G....G................ TCCCCGAAATATTTGGATATGGAGAACTTCTTGAC 11972 32 90.6 34 .......C..G....G................ ACCGCCAATCAAATGTTCGATACCTTCGCGGCTG 11906 32 90.6 35 .......C..G....G................ CATTATCACCGTCCGTAGCCTCATACTGATTATCA 11839 32 90.6 35 .......C..G....G................ TCACGCGAGAATCAACAGCCGATATATTCGGTGTC 11772 32 90.6 35 .......C..G....G................ ACAAATTTCGCCTATCTCTCGTGATTTATCTTCAA 11705 32 93.8 37 .......C..G..................... TGAATGGTACAGAAGCTGGTAAGCAACCGACTGGTAG 11636 32 100.0 36 ................................ ATGGACGCTGCCATGGTATCAATGCCTGCGGCGCCG 11568 32 100.0 34 ................................ CAAAACGCTTGGTATGTATTTATCGCTATCGGGG 11502 32 100.0 35 ................................ TGGTACAAAGAAAGGAAGATGACTCTTTACGTACG 11435 32 100.0 34 ................................ AGGTCGGAGTCCGTGTGATGCCATTGATAACTGC 11369 32 100.0 35 ................................ GCCGTCTTGCTTCTAACTGCTGAAGATAACTTAGA 11302 32 100.0 35 ................................ ACCTCCCTTCCTGGGATTCCATGACCCCAAGATGC 11235 32 100.0 34 ................................ CCGGAGCCACCCGCGCTATCTGCCAAAAAATCCG 11169 32 100.0 36 ................................ TTATTACGCATAGTTTGAAGTTTTTCCCAAGTTGAC 11101 32 100.0 34 ................................ CGTTCTGTTATGTGAAAGTTTTAGGTTAAACGGT 11035 32 100.0 34 ................................ CATTCGGGTGGCAGCGGAGCTTCCTAATCCGGCC 10969 32 100.0 34 ................................ TACGTCCAGAGCTAGTGCTAGCGTGGTTATGATA 10903 32 100.0 34 ................................ CCCTGCATGTCCACTCCATATGGTATCCGCATCG 10837 32 100.0 38 ................................ GGCGGCAGAAGGGGCGGCAACCTGGGCGCGGTCATTCG 10767 32 100.0 36 ................................ ATCGCTGTAGTCACGAAGCGCACGAACAACCTGGTT 10699 32 100.0 35 ................................ GTTGCAATCCGAGCGATCTAGCGATTGAACCTACG 10632 32 100.0 38 ................................ AACCTGGATGAATTCCGGCGCAGCGACCGGAATCACAG 10562 32 100.0 36 ................................ CCTGGTGGACAAGGGAGCCAACGGTAAGCAGTTCAC 10494 32 100.0 38 ................................ CGTTTGCGTCGGGTTGTTGTACATGCCGGGGTATATAG 10424 32 100.0 35 ................................ CTGGATACCGTTCGGAATACTCCAGATGATTTGCC 10357 32 100.0 36 ................................ GGCTTTTTGGGACGGCAAATTGAAACCTATGTGCTG 10289 32 100.0 35 ................................ CAGCAAGCATCCAAAATGCAGGACCATTATAACAA 10222 32 100.0 35 ................................ AACATCTAATGAGATTGCACCTGCTTATTTTCGTG 10155 32 100.0 36 ................................ TTGGCTAAAAAGATGTTCATGCTCATATGTATAATC 10087 32 100.0 35 ................................ CGGCGAGAGAACGCGGTGCTGATCGGCCCATTCTG 10020 32 100.0 35 ................................ ACCGTCAGCTCCGTCAGCTTGTCCTGCATCTTTTC 9953 32 100.0 35 ................................ AGTCACATAAATGCAATACCTGAAGGTGTATCGTC 9886 32 100.0 35 ................................ CGTCAAAGAGTTCGGCATCCGCATTAAAGACGGGG 9819 30 93.8 35 ..............--................ TTCACCAGCACCTGAACTAGATACATAAAAAGCCG 9754 32 100.0 36 ................................ CTTATCTGCTCGGAGGCCGAAATCCTGATAAGGGGC 9686 32 81.2 34 .......AT....G.....T.......AC... TATATAAGCCCTTCATTTTGCTGCGGAAAGCTCT 9620 31 75.0 0 .CT.......T...CG......A-..A..... | ========== ====== ====== ====== ================================ ====================================== ================== 50 32 95.5 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : GGTTCAAGCGCAAGTCCGCTGACGATAAGCTGGACGGCTTGGCTATATGACATTTTGGACTTGGGAGCAAAGAGCTGACTGGACACCCCGTTAATCACCCCGGCTTCACGCAGTGCGTTGATCTTGGCCTCGGCCGGGTCCCCCTTCAGGTCGGTAAAAGCGAAAGCCGACGCTCCAAACCACACCGACGCAGCCAATATCCCGCATGCTATAGTCATTTTTTTGGCATTATGCCTGAAAGTCTGTCTGTTCATCTTTATTCACCTCTTACCTTCTTAGATGCCCTGTGAAGCGGAAAGGTTGCAGGGGGATGCAAGATTGTCTGGAAAAAAGTGCGAACCCCAAGCTCCCATAAAAACCCCGGGAGATTCGCACCCCTTGCGGGACAAGGGTTTTTGCGTTATTTTATAGTAAAATCCCCCTTTTTTACGACTACTTTCAGGGGGTTCGCACTAAAGCGCTTGCAATTCCTTGCGGAGTAAGGGATTGCAGCGGGTGCT # Right flank : AGGACTTGGCTACCGGAAATATTGGTGTTGTCATGCTGCTCCCTTTGCGGGAAGCGAGATAAATGCCGGAAGAGGGCAGAAGGTAATGCATTCAGTGCGAATCCTACTGTCAGTAAATAAGATTTTCCAATATAAATTGTTTACTCTAGTGCCTACTGGAGTATTTTTTTGTGTTTTTTTACATGAAAAGAGGAATTTGACCTGGTTCAAAAGAATTATATACATGAGTATTCGGGATTTATTGGATATTTTGTTGAAACAAGGAGGACGGCATTGTGAGGATTAAAGCTCCCGAATTAAGCCGGGTGGAGCAGTGGATTCAGGAATCTGGCAATTTTATTGTTCCTTATCCAATTACAGTTGTGACAGATGCCTTTATTAGTGGCGGATTGCATTCCAAATACCGGGTGAATACCATCCGTGTCCCGTCTATTCAGGGTCATTTGCGTTTCTGGTGGCGGGCGACCCGAGGGGCAGAGTATACCCATCCGTATGACTTG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 465-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000341.1 Paenibacillus forsythiae T98 S9_contig00880, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 464 32 100.0 35 ................................ GACATGGGCATGTTTCCTCCTAATGGTTATTCGAT 397 32 100.0 35 ................................ CCGACGCACCAAGGGCGATGAGTCCCATAGCCAAA 330 32 100.0 34 ................................ TCTTGAGATCGGTGGGCTCCCAGAACCAGATAAC 264 32 100.0 36 ................................ ATTTCGCAATTGTCACATTCGGTGCGTAGGATATTG 196 32 100.0 35 ................................ GTTTATAGGATACTCCTATATATAGTTGGCCGCCG 129 32 100.0 33 ................................ TTTTAATTTGTCCAAGAATGATTGATAAGTGAT 64 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : | # Right flank : TTGGTGGCAAAGCAGTTTGGCAGGCCGAGTGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA // Array 1 935-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000807.1 Paenibacillus forsythiae T98 S9_contig00881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 934 32 100.0 34 ................................ GTTCAGAGCATTGATGGTTTGTTTTGCTTCTTCC 868 32 100.0 34 ................................ TGACCAACAGCTTTTAATTGACCTGTCGTCCGGC 802 32 100.0 35 ................................ GGATTGATTGTATTGGAGCGTCAGTCTTTCGACAT 735 32 100.0 34 ................................ CCAAGATACCCCCCACCACAAGAAAAGAGCCTAG 669 32 100.0 33 ................................ CGGTTGACCAAGGGCATAGCTTTACCTTTATTT 604 32 100.0 35 ................................ TCACCCATGACGCGCTCCAGCAGCTGGTCTTGCTT 537 32 100.0 36 ................................ AGGACGTTCGGGCTGCTTCACAATTTCCGCCCAATC 469 32 100.0 34 ................................ ATTGAACTGGTTAATTTGCTCGTCCAGTTCACGC 403 32 100.0 35 ................................ TATTTAGGATGTTCCAGTCAACATCCTTATTGGTT 336 32 100.0 35 ................................ TTTGCGCAATAGATAACGTAGTCCGTTCCGCTGGA 269 32 100.0 35 ................................ CTTGCGCAGCTTCCTCTTTGGTACTGACCAATGAT 202 32 100.0 35 ................................ ACGTTCGTCGTAGGTCAATGGTTCAAGCGCCACGG 135 32 100.0 37 ................................ GACAATGTCCTCGGCATCAGGGACTGTCACGCTTTTG 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 100.0 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : CCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAAATAGGAGGCCCCTTTTTAACAGCTAATTTAAGGGGTTCGCACTAAAGCGTTTGCAATTCCTTGCGTCGCAAGAGGTTATGGCAGGTGC # Right flank : TTCCGCTGGAAGAGAAGGTAATGCTTGAACCGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 400-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000859.1 Paenibacillus forsythiae T98 S9_contig00879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 399 30 93.8 35 --.............................. TGACCATCTGAGCTTGATACGCTTAAGCTGCCGGT 334 32 100.0 35 ................................ GTAGTAGACTACATGCTGGGTAAGCCTATCGTATG 267 32 100.0 34 ................................ CGCCATTGGGCGGTGTCAATCGCAGTGAGAACGA 201 32 100.0 34 ................................ CGCGCCAACCTTACGAAAGGCGTAAACGGTCAGC 135 32 100.0 37 ................................ ACATCATTGTTGACCGCGATCAGCATCATCAGTGGTG 66 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 99.0 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : | # Right flank : TGACTCCACAAGAGTATGCTAAGGCTTATGTCACT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : NA // Array 1 5079-3780 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSC01000435.1 Paenibacillus forsythiae T98 S9_contig00874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 5078 31 100.0 34 ............................... ATTCCGCACACCTCTATGTTATATTTTGGCATAG 5013 31 100.0 36 ............................... ATCCGATACTGCCGATTGTTTGTATTCTGATTCGTG 4946 31 100.0 39 ............................... TATCACCGTCTACACCGCAGCACTGGAAGAAGCCAAGCG 4877 31 100.0 34 ............................... CACATGGGCTTGTTTCTCCTTTAGTTCTGAGAGA 4811 31 100.0 33 ............................... CGCCGGAGCAATAAAGTATTGCATAGCCAGTTG 4745 31 100.0 37 ............................... TGTGGAGGGTTCTCGACATTAAAGAGTTCCACGCGAG 4678 31 100.0 36 ............................... TCGCAATCAATCTCCTATACCATATGATGGATGAGG GT [4652] 4610 31 100.0 35 ............................... TGTCTCTGGGCGGATATATGGTCGGAACGTCGTTG 4544 31 100.0 37 ............................... AATCGACAAATTAATGTCAAAGCAATCTCCATTATCG 4476 31 100.0 35 ............................... CTCGTCCGTGAGGTCGCGCTCCTGCTTAACGATGG 4410 31 100.0 35 ............................... TGTCGATGCTTGCGAAGAGGCTAGAAAAGAAGGGG 4344 31 93.5 36 ..C......C..................... CACCGTAGGTCGAATCTGTACTTGAATGGTTAGCGG 4277 31 100.0 37 ............................... ACATCCGGTAATGCAGCAATCGTAACATTCGGCATCG 4209 31 100.0 35 ............................... AAAGCACTTATGGAGTGGATTACACAGACAAATAG 4143 31 90.3 37 ......T..A...............A..... TGTTACAACGTCCGCAGTAATGCCGTATGGGAGCAAG 4076 31 93.5 35 ......T.......A................ TTGTCGTACTCAGCCACTTGTCGGTTGTACTCAGG 4009 31 90.3 34 ......T....A..A................ ATGTCATGGGAGCCTTTGGCGCCAATGTGTTCAG 3943 31 96.8 36 ..........C.................... GATGATTTGATTTTGCAGCAGAAAGAGGATTTTCTG 3876 31 80.6 36 ........T.........T...A..CA...A ACGTCTGATCCAGTGTCGTTGACCACACGAATTGTG 3809 30 77.4 0 ......T.A.....CAA-.....G....... | ========== ====== ====== ====== =============================== ======================================= ================== 20 31 96.1 36 TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Left flank : CAGC # Right flank : TTCGCCGCCAGACATCGGAGACTTCGTATGCTGGCGGCGTGCCCTGTATGAATATGAAGTGAACTCATCATCCCCTTTTTGAATTATTTTTAACAAGCGAAAGCCTTCACTACGACTTAAGCTCACCCTTTGAACGGAAAATTTTCCGCACATTTCTTTTTCAGCTTCAGAAAATTTACCTGATGTGTCAGACTTATTTCCGTGCAGCAGTAGAATTCAAGAATCTAATCCGGTTATTGGGTGCCTTCGCTGGTGAAGGCAATTTGTTATTTCTATAGAGAAAGAGCGAATGAACGGATGCCATGCGATGCTATTTTTATAACCTTGAATTGGGAGTACTTTCTGCATATTAATGTATAAAAAATGAAATCATAGATAGTTGCATGATATTTTCATGAAAAAAGTAAGCGTTCACAGCTCTGTAACGGAGTTGAAGATTTTTGATGGAATTTGGATAATAATGATTGTTTTTTGCTCGATTTATGTTACTATATGGTCAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [22-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //