Array 1 2783-1785 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789536.1 Neisseria sp. HMSC03D10 Scaffold1924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2782 33 93.9 32 ..T..........G................... ATGCCTGCGTTTGGTATGATTACCAACGCTGG 2717 33 97.0 38 T................................ ATGCCTGTTCACTGGTAATATCCACTGCATATGTCTGC 2646 33 100.0 34 ................................. CTTGATACTGCACTGTACAAGGAATTTGGTATAC 2579 33 97.0 35 C................................ ACGCCCCTATCTGACGACGTATGATTTTGTCTATA 2511 33 93.9 34 CA............................... TTGCAGATATTGTTTAATCTTTTCTGCTTGCACA 2444 33 97.0 38 C................................ ATGCCTGTTCACTGGTAATATCCACTGCATATGTCTGC 2373 33 100.0 35 ................................. ACGCGGGCGGCGGCGAACCTGCCGTCTTTTGTGGG 2305 33 90.9 12 G..............................NN NNNNNNNNNNNN Deletion [2261] 2260 33 81.8 32 NNNNNN........................... ATCGGCGACGGTGGAGAACGAACATACCCTTT 2195 33 97.0 34 T................................ TGTATAGTAATCAGTAACTTACAGAAATATCCTT 2128 33 100.0 33 ................................. TTCCCCCCCCGTATACCTGCAAGCAGGCAGCGT 2062 33 100.0 34 ................................. AGGTAGCGCAAATGCTCTGCCAACTTACTGTCCT 1995 33 90.9 13 G..............................NN NNNNNNNNNNNNN Deletion [1950] 1949 33 84.8 34 NNNNN............................ CTAAGGGATTATTTATTTGTACTATAGGATACCT 1882 33 97.0 32 T................................ GCATGGTACAGACTGTTTTGTTAATTTACGTT 1817 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 16 33 95.1 31 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TTTCTTACGGCGGCTGTGGACGCGAGAATGGGCGACGTATTGGTAGAGCTCGGATTCGGTGATGACGGCGATGGCACTTTGAGCGGCAACCGCTTTGCCCTCTCCCCAACCCTCCCCCACGGGGGAGGGGGCAGGCTGCTGTTGGATTTGCCCGTGCAGATCACTTGCGATGGGGTGCAGGCTGCTTTCGGTTTTTAGGTCGTCTGAAACGGCAGCGGCACTTTGTCCCCTCTCCTGTGGGATAGGGTTTGTTGCGGCTGTGGAAAATTCGGTTTGAGCGGCAACTGCTTTGCCTTCTCCCCAACCCTCCCCAACGGGGGAGGGGGCAGGTTGCTGTCGGATTTGCCTGTGCAGGCTATTTTCGACGGGATGCAGGCTGCTTTCGGTTTTAAGGTCGTCTGAAACGGCAGCGGCACTTTGTTCCCTCTCCTGTGGGAGAGGGTTAGGGAGNNNNNNNNNNNNNNNNNNNNTCACTGGTAATATCCACTGCATATGTCTGC # Right flank : AATCTGAGCAATACGGCGGCGCAGGGGCAGTCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNCTCCTGTGGGAGAGGGTTAGGGAGAGGGTTTGTTGCGGATGCGGAAAATTCGGTTTGGTCAGTAACCGCTTTGCCTTCTCCCTCAGAGGCGGGAGTGGGTTGCTGTTGGCTCGGAGAGTGCAGCCCGCCCAGTTTGAATCCGTATGCCAACGGCGCAACTGTGATCATCAGCGGCTCGTGCGCCGATAAAAAGCCCTGCCAGTCGGACACAGGTTTGGCTTTCAAACCGTTTTGCTGCAAGAAACCGAGCATGGTTTCGCGCCGTCCCAAACTTTCGGCGCACAGCAAAATCCGCCCGTCAAAGGTCGTCTGAAAATCCTTCAATGCCTGCAACGGCTCGTCAGATTGGCGGTTGACGGCAAGGTCGGGCAGGGTGTGTTCCTTGCCGGAAACATCGGGCAGCACTTGTCCGTAGTTT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19036-18800 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789536.1 Neisseria sp. HMSC03D10 Scaffold1924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 19035 33 90.9 36 NNN.............................. CCGACGATATTACGCCGAGCTTTGCGCATAACCACG 18966 33 97.0 34 G................................ TTTAATCAACATCCAGCCTGTTGCAAACGTGTTG 18899 33 100.0 34 ................................. GTCAAATACCAGCGTGTCCTGCATGGCAAGGTTG 18832 33 84.8 0 ............................NNNNN | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 93.2 35 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : ATGCTGTCGCCGAACGCGGCAAAGACGGATTGGGCGAGCGCGAAGGCGGCTTTTTGGCGGCAGGCTTGGATGTGGATGTAGATATCGTGTTGGGTTGAGGGGGCAAGACCGTTGCCCATGACGGGGAAGGGTTTGATTTCGCTGCCTTCTTCTGCGTGTCCGAATGCTTTCCATGCGTCGCTGCCGAAGGCGATGGTCATGCCTAAAATATCTTCGGGAAAGCGGGTTTTCAGCTTCGCCAAAGCTTCAAGCGAGCTTCGGCAGGCGGTTTTGATGTCATCGTAGCGACCGTCGCGGATGTCGGCTTCGATAAATATGCCGGCTTGGGCGTGATCGGGGATGATGGCGGTTTGCGGGCGGGGCATTGTGTTTCCTTTTCAGTTTATTGGATTTTTCAGGCGGTATTATAGCACTTAAGGTTTTCAGACGACCTCGTCTGAAAGGGCGGATATGATATAGTGGATTAAATTTAAATCAGGACAANNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNACGCCGTCCTGGTTTAAAGTTAATCCACTATAGAATCCGCCGTTTGTTTTTTGATTTTCAACAGGTTCGCTTTATGTTCGGCACGATGTTTTTGATTATGATTGTATTGCTCCAGCTTTTCACGTTCGGGCTGGGGCGTTCGTTGCAATGGCTGTTTGCGCCGGTGATCGGCAAGGCGGGCAGGCGTTGGCTGATGGGGGTGTCGTATTTCGTGACCAACGGCCTGTTGGCAGGGCTTTTGTTGGAATTGGGACATTTTATGTTCCGCATCATGGCGTTTTGGATGGTGTTGCTGCTGTTTGTGATGTATGCGGCATTGGCGACGTTTATCCTGTTTCTGCTGCTGCGCAAATTCGTGGCCATCCGGTCGCTGTCGCGCAGCCTGCGCTTGTTTGCGCCGCTGTTTGTGTTCGGCTTGGTCGGCTTGGGGATGTACAACGCCTATACGCCCGTCGTCCGTCATCAGACCGTCGTGATCGATAAGA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.40,-13.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 31936-27953 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789536.1 Neisseria sp. HMSC03D10 Scaffold1924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 31935 33 97.0 33 T................................ AGGCAGTTATCCAAATCCAAGCAGACTTTGCTT 31869 33 84.8 9 G............................NNNN NNNNNNNNN Deletion [31828] 31827 33 78.8 32 NNNNNNN.......................... GGCAGGTCTGGGAGTAGTGGTGGTCTGACACA 31762 33 100.0 34 ................................. GCTGCCGTTTACGGACGGCCTCACCCATCCGCCG 31695 33 100.0 32 ................................. AGCCCATGCTTGAGTAGCAAGAGCCAGAGGAG 31630 33 90.9 13 ..............................NNN NNNNNNNNNNNNN Deletion [31585] 31584 33 87.9 32 NNNN............................. AAGAAGTTACTGAAAAAGCCACAGGAAGCGTA 31519 33 97.0 35 T................................ TAAAGGAAACAACAATGGCAGTTTTGTTAAATCTG 31451 33 97.0 32 T................................ TTTTATTACACTGGACACCCTTAATCATTTTC 31386 33 90.9 13 ..............................NNN NNNNNNNNNNNNN Deletion [31341] 31340 33 87.9 33 NNNN............................. ATCTATCCCGATCCGTTTGGCGATACAGGTTTT 31274 33 97.0 35 A................................ ATCAGCTGATACTCCCCATCCTCGCCGCGCTGATA 31206 33 100.0 37 ................................. CCATCGGTGCCAAGCCCGCTCTGACACCCCATCAGGA 31136 33 90.9 12 ..............................NNN NNNNNNNNNNNN Deletion [31092] 31091 33 84.8 34 NNNNN............................ GCAAGCAGCACGGCTATGTCCCTAAGGGACGCAG 31024 33 97.0 34 A................................ TTATAATTATGCAAAAGTTTTATAAGTTTATAAA 30957 33 97.0 34 A................................ CCACAAGACAGGGAAAGGCAACACATCAAGGATA 30890 33 87.9 13 T.............................NNN NNNNNNNNNNNNN Deletion [30845] 30844 33 87.9 33 NNNN............................. ATGTACCGAAAACCACGCACCGGCCATACATGA 30778 33 100.0 34 ................................. ACTGTTGCTTTGGTGATACCTCTCATATAGGTTG 30711 33 97.0 34 T................................ TACCGGGATATGAACGTATCTGTAAAGATGCTGA 30644 33 87.9 13 G.............................NNN NNNNNNNNNNNNN Deletion [30599] 30598 33 87.9 33 NNNN............................. GACTATTGCCGCCTGATTGTCGCTACACCCTTA 30532 33 97.0 34 G................................ TCCAACATCAACGGCCTTTTGATAGACCATCATA 30465 33 97.0 33 A................................ CAGCAGGCTGAGTGTTTGTTTGAGTTTGGCGGC 30399 33 90.9 13 ..............................NNN NNNNNNNNNNNNN Deletion [30354] 30353 33 87.9 33 NNNN............................. CTGTATCCGGTCCGATGTATTGCACGGGGTTGA 30287 33 97.0 35 T................................ TATAAAATTTATCATTTGCTGAAAAAGGAAGAATC 30219 33 97.0 36 A................................ TTTAATCAACATCCAGCCGGTCGCAAACGTGTTGAT 30150 33 97.0 33 A................................ GCCCAAGTGCGTTAAGGCTTTCGTCACTCGCTG 30084 33 100.0 33 ................................. GAGCAGACATCACGCACCGAAGCCGCCAGCATA 30018 33 81.8 9 G...........................NNNNN NNNNNNNNN Deletion [29977] 29976 33 81.8 34 NNNNNN........................... TCCAAATAAAAAAGGCCGTCTGATTTCAGACGAC 29909 33 100.0 35 ................................. CAACTGGACACCTTTGGGCAAGTCTGCTACAAGGC 29841 33 97.0 33 G................................ CTGCGTATTCCTACACCATCAAGGGCGCACCGC 29775 33 97.0 33 T................................ ATTGAATAGAGGATTGGGTTATGAAATATAAGC 29709 33 97.0 32 A................................ AACAGCTTCGCAATGTCCTTTTTGTGGACAAA 29644 33 97.0 34 G................................ GCAGCTTGCGCGCCTGCTTGCTCATAGTTACATC 29577 33 87.9 12 G.............................NNN NNNNNNNNNNNN Deletion [29533] 29532 33 84.8 32 NNNNN............................ AGGCGAAATCGGTTTAGAGCTTGCCTTCAGAC 29467 33 100.0 32 ................................. TAGAGACAGAAGGTTTCGGACGATTCGGGGAC 29402 33 97.0 32 G................................ TTCCAAGCGATTCGCCAAACGTGATTTAATGA 29337 33 84.8 10 ............................NNNNN NNNNNNNNNN Deletion [29295] 29294 33 84.8 32 NNNNN............................ AATCATGAAATACTCAAAAGCCAAGCAAATTG 29229 33 100.0 33 ................................. AATAAGAGATCGAGTCATGAAGTATAAACACTA 29163 33 97.0 33 T................................ GCATTCGACCCAATCGTTAAAGCCAAAATCACT 29097 33 87.9 13 A.............................NNN NNNNNNNNNNNNN Deletion [29052] 29051 33 87.9 32 NNNN............................. TGCTTGATACCATCGCGGAATACATGGGTAAA 28986 33 97.0 34 T................................ CAAATTTGAGAAGGCATCATGTTTAAAGAACCTT 28919 33 97.0 33 G................................ TGGACGGTGATTCCAAGAAGATTTATTGGGCGA 28853 33 87.9 14 G.............................NNN NNNNNNNNNNNNNN Deletion [28807] 28806 33 90.9 33 NNN.............................. GTGCGGCTAATAATGCTCCTGAAAAGGTAGTTA 28740 33 97.0 32 A................................ GTCTTGTACGTCGATAGCTTTGTTTGGACGTA 28675 33 100.0 35 ................................. TGAAGACTGTGGATTTGGAGACGCGACTTTCTACG 28607 33 84.8 12 G............................NNNN NNNNNNNNNNNN Deletion [28563] 28562 33 87.9 35 NNNN............................. CTTATAACCCTGATACATCTTATAGCCCATGAATC 28494 33 100.0 34 ................................. TTCAGGGGTTGGAAAATGATTAAGGGTGTTCAGT 28427 33 97.0 33 G................................ CTCGAATCGTTATTTGTCGTCTGAAAAGCGAAT 28361 33 90.9 13 G..............................NN NNNNNNNNNNNNN Deletion [28316] 28315 33 84.8 33 NNNNN............................ TCGGAGAGTGCGCGGTTAAATATGCTGGAATTG 28249 33 100.0 33 ................................. AAGCAAATCGGCAAATCCTATGCCGCAGCCGCA 28183 33 93.9 34 G............G................... AAAATGTATCGGATATTCCGCGTCGACAGCTTAT 28116 33 90.9 32 G............G..................T AGACGACCTCTACCGTACTGGCGATTGATTTT 28051 33 81.8 33 G.T.............TAA...C.......... CCGTAGCCGAGGGAGCAGAGGTAGAGGCGCAGG 27985 33 69.7 0 .......AT......CTAA.CA.A...C..... | ========== ====== ====== ====== ================================= ===================================== ================== 65 33 92.4 29 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTATAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGGGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAGACTGTGTTTTCCTGATTTAAACCATCTGTAACCATTTACTTTTTGATGGTTATGTCTGAAAAATCATCTGTTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTTTTTCAGACGACTGTAATTGGATTTGTTTGGTTCTAATTAAATCAGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATACAGGGTTTGATTAGCTAGGGGCTGGATAAAAACGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTTCTGAAGAAATTGAGGAGCTGAAAAAAGCCAAATTGAAACTGAAAGACG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [46-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8930-8428 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789514.1 Neisseria sp. HMSC03D10 Scaffold1387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 8929 33 100.0 39 ................................. GACGTTTTGCTTTTCCAGTTTGTCTAAAAAACGTTCCAA 8857 33 90.9 12 ..............................NNN NNNNNNNNNNNN Deletion [8813] 8812 33 84.8 37 NNNNN............................ GACTTTGGCTACCCCTTTTGCAGCATTAGCCTCATCG 8742 33 100.0 36 ................................. GACCCATAAAATTTTCCATTCCAATATTGTTTGGAC 8673 33 81.8 38 ...........C.......GC.....TCT.... TCTTTTCAGACGACCTCAAGCCAAGGTCGTCTGAAAAT 8601 33 87.9 36 ..T....A..C.........C............ GACACGGGGGAATACCTCTATAACGACCAACTGTTC 8532 33 93.9 39 ............A.......C............ GACCTGAATCGGCGGTTTTCGTAATCCATGCTGAACATC 8460 33 84.8 0 ...................GC.......G..TC | ========== ====== ====== ====== ================================= ======================================= ================== 8 33 90.5 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAA # Left flank : GGCAAGAACGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCCGCAGAAAGCCCCGATTTCAACGCGGCAGAGAAAAAAGAAATTGCTGACGTGTTTACCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGACAAGCGTGGCAAAGAGCTGAAACCCATCCTGGCGAAGCTGCGCGGCGAATAGATTTTCATCTTTATCGAAGCCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACGGTTAAAAAGCGTTGTCCAATGCAAAGCAGACGGCTATAATCCGAAACACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCTAACCTTTCTTAACCATATAGAAGATTGAAAATAATGAAATTTTTTAACCGAGTGCA # Right flank : AATCTTTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTCGCGCTTACAGCTTGCCCACACCGCCCAAGATGATGCCTTCGGGCAAGGCGGGTTTGCCCAGGGCATGGATTATGCTGCTGTTGGGCAGGGGATAGCAGCGTAAATTGTCCTGCTTGGCGTTGAGCATTTTGCAAAGTGTTTCAAAGCATTGCCTTGCTTGATCACTGCTGCCGATGTGCAGGAAAACGCTGTTTTGCAGGGGAATGGCGTGCTGTATTAAATAGCGGTGTGCTTTTTGCAGGCGGTGAGGGTCGGCGATGTCGTAGGCGATGAGGTGGCGCATTTTTATTCTAAGGTGGTAAGTCCGCTTAATTGGATTTCAGGCTGTC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2726-2137 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789541.1 Neisseria sp. HMSC03D10 Scaffold228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2725 36 100.0 32 .................................... GGTCGTCTGAAACCTATAAACACATGGTTTCA 2657 36 100.0 35 .................................... TTCAACACAGGAACGGATTCAACCCGCTTGTACAG 2586 36 100.0 34 .................................... TTAAAAGTTTCCATAATTTTATATCGCTATCACA 2516 36 100.0 33 .................................... GATAAAGTTTTTCGATTTCGTCCGCCTGTTGGC 2447 36 100.0 32 .................................... AAAGAATGGGCAGCAACTGCAAATTACTATAT 2379 36 100.0 33 .................................... CAATTAGATTCTCAAATGCTTTCATTTTGTTGA 2310 36 100.0 34 .................................... AAAGCCACAACTTCGACATCACCAATAGCTCGTA 2240 36 100.0 32 .................................... TTTTCATGATGTTATCCTTTTTAAAAAGTTAA 2172 36 88.9 0 ..............................G..AGT | ========== ====== ====== ====== ==================================== =================================== ================== 9 36 98.8 33 GATAAAAACAAAGCCCCATCACTAGGGGATTAAGAC # Left flank : TCCTGCCCGCATCCTATCCCGCTGATATAGAAATTACCTTCCAAACCCCCTTGCGCCTGCAGCAGCAAAACAGCGTATTAGGCATCAACCGCCTTACCGCCGAAATCCTGCTCAAACAACTGGTCAGGCGCACATCCACACTCGCCACCCTATACTGGCAGAGCTTGGAAGCCGATTACCCAAGCCTGATGCAGGCCGCGGCACACATCAAAAGCAGCCATCAACTGCAATGGCTGGACTGGAGCCGCTACTCAAACCGCCAGCAACAGCAAATTAACTTAGGCGGAGCCATAGGCACTTGGCAATTTCAAGACTTACCGCTACCATTCAGCCAGTTGCTCCACATCGGACAATGGCTGCACATAGGCAAAGAAACCGTATTCGGCTACGGACGTTACAAGATAAAAGAGGTTAATCCATGTTTAACTTTGTAAACCTTAAGAGTGTTGGAAACCACATTTTCAACTCATTGACTTTAAAAGGAGAAATGCAGACCTGCT # Right flank : TTCAGACGGCCTTGTGTGATTGGAGGCCGTCTGAGACCTTTGCAAAAATAGTCTATTAACGAAATTTGACGCATAAAAATGCGCCAAAAAAATTTTCAATTGACTAAAACCTTCCTAATATTGAGCAAAAAGTAGGAAAAATCAGAAAGGTTTTGAATTTTGGAAATGAGATTGAGCATAAAATTTTAGTAACCTATGTTATTGCAAAGGTCTCCGTCTGAAAGTTTGAAGATGACAGTTTTGTCAGCCTGTCCGAAATTCGATGGATGGGCTTTATTTTGTGTCTTTGGTTATGTCGGATGCTGTCGGTATGGGTGTTATTTGTAAGTCCATGCCGCTCCAGACGATGCCTTCGGGCAGGGGGCGTTTGCCAAAATGGATTATGGGTGTGTGTTCGGATAAGACGTATATCCGTAAGTTGTCTTCTTTGGAGCGTATTTGTTGAATCAGGTCTTGATAACAGGCCTGGTAATCGGCTTCGTTGCCTTTGAGCAGGAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAAAACAAAGCCCCATCACTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //