Array 1 46478-45584 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGFWY010000004.1 Staphylococcus coagulans strain M2043/98/1 NODE_4_length_201539_cov_39.6922, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     46477	    36	 100.0	    30	....................................	AGATCTATGATTTAACGGAAGAAGAGAAAC 	
     46411	    36	 100.0	    30	....................................	CTGAAGCACTATAGACTGGATAACGCGCGT 	
     46345	    36	 100.0	    30	....................................	CATTGAGCGAAGAATATATAAGAGTTCTTA 	
     46279	    36	 100.0	    30	....................................	AATATGAATTGGCAGCGCATCAATTCGAGA 	
     46213	    36	 100.0	    29	....................................	AAATGCCAATGGACCAATTGACATTGATG  	
     46148	    36	 100.0	    30	....................................	GCGTGACGCATGGTAATTACAAAAGAGTTT 	
     46082	    36	 100.0	    30	....................................	TAATCGTTCGTTTTAAAGACGGACAAGATG 	
     46016	    36	 100.0	    30	....................................	ACATTTAAATGAACTCATCGATTATATTTG 	
     45950	    36	 100.0	    30	....................................	TTAAAATACTCACATTCATATTGTACATAT 	
     45884	    36	 100.0	    30	....................................	TGAAACGGGAAAAATTGATGCAGGGTTTAC 	
     45818	    36	 100.0	    31	....................................	TAGTGTTACGTAAACGCCAACCGTTATTTAA	
     45751	    36	 100.0	    30	....................................	ATGCGACTGTTAAACTATTTACAGATTGGC 	
     45685	    36	 100.0	    30	....................................	GCATGCGCGCTTCTGAAAAGGCAGTGATGA 	
     45619	    36	  97.2	     0	...........................G........	|                              	
==========	======	======	======	====================================	===============================	==================
        14	    36	  99.8	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC	                               	       

# Left flank :   ATTATATTAGAAATGAAAAGCAATTATTGACAGCAGAGTTTATTGATCACTTGGTGTGGGATGCACCACTTAATTTTGAAAAGCATGAAATTAAACGTAGCTTAGAAAAAATTATTCAATTATATCAAGAGGTCATTGAATTAACTCCGAAGATTTCAAATTATAATTTAGCTGATATCATTGTGTTTGAGCCAATAGATATCTATGTTGTCGTAAGATACCTTAAACATGCAAAACAAGATTTTGAATTGGATATCCATTATGATAATTTACCGATTGCTGTAGCGAAATATATCAGAATGTATGATTTGAAGTTTAATAAATAAATCTAAACGCCTATTAAAGGGAAAGGTTCTAGCGCTTGGTCAATTGACTTGTAAATCAATCGATTAATCAAGCGCTTCTAGATTATTTTAAACAAAATTAAACGAAAATTTAAAAATGTCTAGCATAAACTTGCTTATAATAATCATAAAAATAAGCTATAATTATAGCTAGAG
# Right flank :  ACAGTTTAATGTTTGTTTCTATTCTTGCGAGTTTTAGTACTCTGCAATTTTAAATGAATACTAATCACGGATTGTTATAAAATTTGTTTATAATAAAGACAGAGATGTTTTCTAAGATACCTCGTGCTTTTTATTGATTGTATAGCACAAAAAGGCAGAGAAAAATTTGTGAATGTTTTTAACATTTGATATTAAAAAGAGACAAGAATCTTAATTATGTAGTACTGTAAGTTTAGCAAACAAATTAGAACAAATTTTAAAATTGTTCAAGACTCATATAATTCAATATATGAAAAATACAATAATACTAAAATCAATTGACAAGTATTCTTGCTACTGGCAAACGTTGTGACATAAACAATACGGTAGCTTTGTCTATAAAAGTATAAGCTCATTGATGTGAATCTGCTATATACATCAATGAGCTTTTATTTTTAAAGTACTTGTAGAATGAATACACTAAAATTCAGAATTTAATTATTATGTTCAATATTGTTAAT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-3.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//