Array 1 8929-10300 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDK01000017.1 Escherichia coli strain CMJH107b NODE_17_length_103888_cov_294.154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8929 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 8990 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 9051 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 9112 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 9173 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 9234 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 9295 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 9356 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 9417 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 9478 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 9539 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 9600 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 9661 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 9723 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 9784 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 9845 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 9906 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 9967 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 10028 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 10089 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 10150 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 10211 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 10272 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 291486-292673 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDK01000004.1 Escherichia coli strain CMJH107b NODE_4_length_309635_cov_302.367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291486 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 291547 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 291608 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 291669 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 291730 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 291791 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 291852 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 291913 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 291974 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 292035 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 292096 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 292157 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 292218 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 292279 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 292340 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 292401 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 292462 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 292523 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 292584 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 292645 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //