Array 1 36-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JULW01000052.1 Corynebacterium striatum strain 962_CAUR 684_278_5589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36 29 96.6 32 ............................G GCTCGACGCGGCGTCGAAAGCTTGCTTTCCGA 97 29 96.6 32 ............................G CTCACGGCAGGTACATTCCACTCGCTGTCAGT 158 29 100.0 32 ............................. GCGTGGGATTGGATTACCGACGTAGTCTCTGG 219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCCACGTAGCGGTCACCTGGGATGTGGGGTCGGTGG # Right flank : CACGGAGCCAATCTGCGGGCGCGGTGTCTTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67165-66343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JULW01000063.1 Corynebacterium striatum strain 962_CAUR 764_67198_1925003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67164 29 100.0 32 ............................. GCCTCATCCGTAGCGTCCGCACGCTTACCCTG 67103 29 100.0 32 ............................. CGCACGTGGGGTATCCGCCCTGACCTTTTTGA 67042 29 96.6 32 ............................G TATCACTAACCCCAGCAGCAACCGAAGCACAC 66981 29 100.0 32 ............................. CCGCGTGCCACCATGGCCCGCCGCCAATTGCT 66920 29 100.0 32 ............................. TCGTCGAGGTTTTGAGGTTGGGGGGATTTATC 66859 29 100.0 32 ............................. CGAAGGTTTAATGCCGCCAGATTGGATCTCCA 66798 29 100.0 32 ............................. GTCCTCGGTCCAGCCCAGGGCGTCGTAAATCT 66737 29 100.0 32 ............................. CAGCGCGGGCTGGCTGGGGGTGTTAGCCGCTA 66676 29 100.0 32 ............................. GATAGCCGCGAATTTAAGAATCCTTTTGCTGT 66615 29 100.0 32 ............................. GCACCTTGCCATTCTTAGCAATCTGATCATTA 66554 29 100.0 32 ............................. CTCAAGCCAGGTGAATGGGAATTCACTCCCGA 66493 29 100.0 32 ............................. ACGACTACCGACACACCACCCAGCGCGGCATC 66432 29 100.0 32 ............................. CTCGTCACGGGTAACGCCACCAAAGCCGCCCG 66371 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCCACGGAGCCAATCTGCGGGCGCGGTGTCTTA # Right flank : TTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAAAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2130-1552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JULW01000108.1 Corynebacterium striatum strain 962_CAUR 1059_2163_465231_526_,288+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2129 29 100.0 32 ............................. CACAATCATCATGCCGCCATACAAGCCCCGCG 2068 29 100.0 32 ............................. AGTTCCATTACGCATCCTCCCCTGCTGCTACG 2007 29 96.6 32 ............................G AAATGGCAGTCAGCGGCCCATGGAAAAACCTC 1946 29 100.0 32 ............................. CCACGCCCCGTATTCCGATACCGCTAAAGGAC 1885 29 100.0 32 ............................. ATCTTGGGAGGCGTAGCCTCCTGCTTCAACCC 1824 29 100.0 32 ............................. CTAGTGGTGGTAATTCTCAGGTACCTGCAGGC 1763 29 100.0 32 ............................. CCGAACCGCCCTTCTGAAAGGAGACACAATGC 1702 29 100.0 32 ............................. TCTTAGACGGGCCTTACGGCACCTACGACCCG 1641 29 100.0 32 ............................. TGGACGGCGGCGTTAACGTACATGCCGGAGTA 1580 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCCACGGAGCCAATCTGCGGGCGCGGTGTCTTA # Right flank : TCATCCCATGCTTTGCGCACGATTGCTTCGTGGTCCGCCTGCCGGTTCGTCGTAGTTGGTACCGGTAATCCGCGTAGTTGGTACCGGGTTTCCGGGTAGGTGGTACCGTCAATCATTTTCGGTCATTGTATAGGTGGCGTGGGCACAACCTGTGCCGGCGCGTCATCACCTTTCATGACCTTAAGGAGGGCCTTTCATGGCCAACTTCAAAGACATCATGGCACTGTGTCTAGATGGGGCAACCTACTCCGCTATCGCAGCAGCGCTTGGCTGTTCTAGACGCGATATCGCCAAAGTCAAGACACTCATCGCTGACCACGGCATCACTAAGGAGTCGTTTGCTCAGCTGGATCCATCATTCTTCGACGAGCACTTCAGCGACCACCGTGGGGCCCGTCGCAAGCGCTACGACCAGCCAGACTTTGAAAAGCTCGCCAAGCGCCTTGCCAACAACAAGCATCTCACTCGCCACAAGCTGTGGATGGACTACGTTGCTGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65921-66070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JULW01000132.1 Corynebacterium striatum strain 962_CAUR 1085_66105_1943202_950_,...,257+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65921 28 100.0 33 ............................ CGGAATTTGGGTTCTTAACCTTTGGGTTGAGGT 65982 28 100.0 33 ............................ GGGCACTCCTAGTCAGATTCGTGCGCTAATTGA 66043 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCCGCCCCGCGTAAGCGGGGATGAGCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CGGCGTTGAGCTGACCGCAGCGCAGCGTGCACGGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JULW01000020.1 Corynebacterium striatum strain 962_CAUR 273_425_10172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61 29 100.0 32 ............................. CCACCAGTAGCCAGATTCTTTAGAAATAGCGA 122 29 96.6 32 ............................G TCTCCACCCCGGAACTGGACGAGGTACGGGGC 183 29 100.0 32 ............................. GGGAGGTCATCAACAAACACTTATCCCTCTAG 244 29 96.6 32 ............................C CATTTTGCGCCCTCGGTCACGTATGGAAGCAA 305 29 100.0 32 ............................. ACGCGGTGCAATACAAAACGCCTGACGGATGG 366 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCT # Left flank : AACCGGAAACAGGCAGTACCACGGAGCCGTAACCGCGGTACCAACTACCCGCGCTCAGCAG # Right flank : CACGGAGCCAATCTGCGGGCGCGGTGTCTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //