Array 1 28928-30668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUA010000006.1 Riemerella anatipestifer strain 20190319E1-1 NODE_6_length_137074_cov_271.874070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28928 47 100.0 30 ............................................... TCTGCACCCATAAAACCGATTGATGCGCCG 29005 47 100.0 30 ............................................... GGTGCGGCCGTGATCGTGCTGGCCGCTGTC 29082 47 100.0 30 ............................................... GACCGGAGAGAAGAATGGCAACTGATCAGA 29159 47 100.0 30 ............................................... GGTGCACAGATGCATGTGGCAGCAGGCCAG 29236 47 100.0 30 ............................................... ATGATTAAATTCGCCCCTCTTTATCTCATG 29313 47 100.0 30 ............................................... TCACAGCTTCTTCAATCCAAACAAGCACCC 29390 47 100.0 30 ............................................... CCAGAAACCTCACTTCCGTTATTTTTAATT 29467 47 100.0 30 ............................................... AGTATCTCCGCTTAAGTGAAATCGCTCTAA 29544 47 100.0 30 ............................................... GACAAAGCTTTGATTGCACTGGGCCATAAC 29621 47 100.0 30 ............................................... GCACCTATGTGGCATGATACAGAAGCTAAT 29698 47 100.0 30 ............................................... TACGTTCCACCGCTTTTCTTTTTAAATCCC 29775 47 100.0 30 ............................................... GCATGATCCCAAGCTATGTACGCTCCTGGA 29852 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29929 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 30006 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 30083 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 30160 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30237 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30314 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30391 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30468 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30545 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30622 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 98.6 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 11952-13305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUA010000016.1 Riemerella anatipestifer strain 20190319E1-1 NODE_16_length_16268_cov_266.444753, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ================================================================================================== ================== 11952 21 95.2 44 ................G.... GAGAGCAGTCCCAACATCGCTGTATTTCAGGAAAAAGGAAAGCG Deletion [12017] 12018 21 100.0 95 ..................... CTGTGCATTCACGAACTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAA 12135 21 100.0 95 ..................... TTATGCATTCACGAACTCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGAC 12252 21 100.0 94 ..................... TTATGCATTCACGAACTCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGA 12368 21 100.0 95 ..................... CTATGCATTCACGAACTCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATC 12485 21 100.0 94 ..................... CTATGCATTCACGAACTCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGG 12601 21 100.0 95 ..................... TTACGCATTCACGAACTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTA 12718 21 100.0 44 ..................... GAGAGTAGTCCCAACCTTTCAGCCTATCTTTATTTAAAGCCATT Deletion [12783] 12784 21 100.0 44 ..................... GAGAGTAGTCCCAACGTTCCCTTTATAATTTTCTTCTGCTTCAA Deletion [12849] 12850 21 100.0 44 ..................... GAGAGTAGTCCCAACACTTACTTTTGATACAATTGAATACGAGT Deletion [12915] 12916 21 100.0 45 ..................... GAGAGCAGTCCCAACGGTACAAAGATTATAAATCTTCATTGGTGG Deletion [12982] 12982 21 100.0 97 ..................... CTGTGCATTCACGAACTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACAGTTTACACCAGCAAAAGGGACAAAAAGAT 13100 21 95.2 98 .........C........... CTTAAGCATTCACGAACTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGAT 13219 21 95.2 44 ...................A. AGAGCAATCCCAACTAGATGAAAGTGGTAATCTTAACTTTGTTC A [13235] Deletion [13284] 13285 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ================================================================================================== ================== 15 21 99.0 74 GTTGTGAATACCCTTCAAATG # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : GCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATGCAGCTGCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:-0.5, 7:-2.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATG # Alternate repeat : GTTGTGAATACCCTTCAAATGAGAGTAGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //