Array 1 163362-160526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163361 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163300 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163239 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163178 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163117 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163056 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162995 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162934 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162873 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162812 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162751 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162690 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162629 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162568 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162507 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162446 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162385 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162324 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162263 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162202 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162141 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162080 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162019 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161958 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161897 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161836 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161775 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161714 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161653 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161592 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161531 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161470 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161409 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161348 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161287 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161226 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161165 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161104 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161043 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160982 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160921 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160860 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160799 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160738 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160677 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160616 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160555 29 93.1 0 A...........T................ | A [160528] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181912-179869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181911 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181850 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181789 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181728 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181667 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181606 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181545 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181484 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181423 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181362 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181301 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181240 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181179 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181118 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181057 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180996 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180935 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180874 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180813 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180752 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180691 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180629 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180568 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180507 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180446 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180385 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180323 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180262 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180201 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180140 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180079 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180018 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179957 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179896 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //