Array 1 74847-75678 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPA010000001.1 Aerococcus urinae isolate Au-44-B14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 74847 32 100.0 34 ................................ GTTAGTCGAATTATACGCTAATGATTGCGCTAAT 74913 32 100.0 34 ................................ CACCCGGTTAGAGACTACCTAAGAGGCCTAAAGT 74979 32 100.0 35 ................................ TTTGTAAGACAAGCGTATAAAGCGGCGGAAGATTA 75046 32 100.0 35 ................................ AACGACTGGCACGATCTTATAAGCGTGAGTTGTGC 75113 32 100.0 35 ................................ CCTCCGTTGCCGTTAATAATGCAAAAGACGGGCTC 75180 32 100.0 35 ................................ GACAAGTGCGGGGTTAGTGATCTATGACGACAAGT 75247 32 100.0 34 ................................ TGCTGAAATGCTGGACTCGGTAACAAAACGTAAG 75313 32 100.0 34 ................................ CGCCACAGAGAGCGGAGCAACAACTAGGGTTTTA 75379 32 100.0 35 ................................ TCCTTAACTGATGAAACTAAGAAAAAAATTGAAAA 75446 32 100.0 35 ................................ AGACATAAGGCATACTTTCATACCACAAAACAGCG 75513 31 90.6 34 .........-..A........A.......... AGATGCACGTGAACCAAAATATACCGTTTCCCGC 75578 32 93.8 37 ..........A....T................ TAAAGGACGCATCCAGACATCTTATACAAGTCCGCTA 75647 32 93.8 0 ............A..........C........ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 98.3 35 GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Left flank : AGCTACTAGCACGGTATATTCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTGAGATGATGGTGTTAATTACTTATGATGTGAATACTGAAAGTAAGGCTGGTCAGAAACGTTTACGTAAGGTGGCCAAGGTTTGTGTTGACTATGGTCAACGGGTTCAAAATTCGGTTTTTGAATGTAGCTTAGATCCTGGGCAATTAGCACTCGTTAAATCGAAATTAGATGATATCATAGATAGTGAGGTCGATTCGATCCGCTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACTTTAGGACGGGACGATACCTATCACCCTGAAAAGGACGTCTTACTCTTATAACGAACCCCAAGCACACAGATTTGTATCGGTAGTTTCGTTTGTATTATGGCCTTAAAAATATAATATAAGTGATTATTTTGCTCTTTTTTAGGCACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TTAACATGCGGCTATGTGGTTCAAATCAGGTACAAAGTTGCAGGCTTTATTTCAACAAAGCTAGGTTATTTACGCAAAAAAATCAGCCCTTGTCAGCTCTTCCAATAGGGAGTCCAACAAGGGCTTTTACTATTACAGCGACTCACAAAATCACTAAAAATATTAACTGAATCCTAAAAATAAATCATAACACCACTAACACCGATCACTATTGATCTTTTTTACTAAGTTGACAGTGAGACTTAGAGAGGATAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTATTTTGGTTACCCCAATTGAAGAGGAGTCTATGCCGGATGTAATCGAAGAGAATGAAGCCGCATAGATGGCGGTTATGTGAGACTGTGAGTTTTTACACAAGTCCGCTTAACTTTTCTATGCGGCTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 192669-193298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPA010000003.1 Aerococcus urinae isolate Au-44-B14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 192669 36 100.0 30 .................................... TGAACTTTAAAATGTCGAATCAGACGTATG 192735 36 100.0 30 .................................... TTCTGAATGTGAATAGAGATACTGTCTATA 192801 36 100.0 30 .................................... CGAGAGTGGTGCTGGAAGGGGCGCCTCCTT 192867 36 100.0 30 .................................... CTAGCTCATCATAGGGTATTAACCCATCCT 192933 36 100.0 30 .................................... AGCGCTATATATCATCCATCCAGTGTCCAA 192999 36 100.0 30 .................................... TCAGATTCTAGCAACTGTCGAAGGCTACCA 193065 36 100.0 30 .................................... TCTGGGGGCGTTTTTTTGTTTATAGGTCTA 193131 36 100.0 30 .................................... ACCTTTGATCCCAAAATAATTATTATAGTC 193197 36 97.2 30 ..............T..................... GAACTTGCTTATCATCGCCTAATACGGCCA 193263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTTTGTACTCTCCATAATTTTCTATCAGTAAAAC # Left flank : GTGCCCAGTTGGTAATTATTTTGTTAGATTTAGAGCCATTTCGAGCAGTCAGTTATGAATCAACAGAATTCATCAAGCAGTTATTACAGCTTGCTGAGGAAACTCATCTGCTGAAGTTGATTATTTTTGATGATGGCGATCTCAATCAACGTTTTGTTATTGACACAGCAAAAACGATTGTTGTGGCGGATGATGTGCAGCAGATGCCGGAATTTAATTTGTTTAAAGAATCTATTGCTAGACATTATCCCGATTCACTGACTATAACTGAGGAAGAGTTGCAGCAAAGATTCTATCGCATATGTAAGTATCTTGGACATAGTATTGCTACGGATATTAGTATAAGTCCTAAGGATATGATATTATTGTACGTAGTTAAGGATCTTTTAGGAGATACTAGCCATATCGAGACGTCGATTGATGACTTATCTCAAGCTGAAAGGGCTTATCTAACGTACAAGAGCTCGAATTAATGCAATTTTATCGCAAATCAATTTGAG # Right flank : CATAGCTGGTCACTTATCAAGGGGACAGATGGTTTTTGTACACTCCATAAAACCTCATTGATTTTCTATTATAATACTAAGAATAACTCAACTTTAAAAACTAAACTTTAAAATTGATTAATATAAATAAATTGTTTATTTATAGATTATTCGGTCACTTCTGTGATAGGATGTTTATATTATGGAAGGAGAGATAGTATGGCCGATGAAAATAAAAATTTAAAAGATAATCAATATGTTGGTGATGATGGAAAAGTATATGAAACTGTTGAGGTAAAACCTTGGTATAAAAAATGGTATCTGTGGGTAATTTTTGCTCTGGTACTATTGCTATTTATACCAATGTATCCTGTTTCTCATCCGGCAGATAATTCACAAGAAAATATGGCTTCAGAAGAAAGTATTCCGAGCGAATCCTCATCGAATACGGAAGCACAAGAGAATAATTCCTCACAGGACTCATCTCAAGCAAATAAACAGATTTATTCTGCAGGTGAAGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCCATAATTTTCTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 356891-356679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPA010000002.1 Aerococcus urinae isolate Au-44-B14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 356890 29 100.0 32 ............................. TTTAGAGATGGATCAAGAAATCGACATAGACC 356829 29 96.6 32 ............................C GACTAACCACCTCTCCGACTCCTTTATGGAGC 356768 29 100.0 32 ............................. TGAAAAGGAAAACATCCTAGACTTTTCAGAAA 356707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : TTGAAAGATTCTATTATTGAAATTGCAGCGCTTGCGATTAAAAATGGAGAAATAGTTAAAGAATTTGACTGTCTTGTAAATTATGAGGGCATATTGCCTCTTGAAATTACTTCATTAACAGGCATTGCTGATCAACTTTTGAAAAAAGAAGGTCAGAAGCTAGAAGATGTTTTGAAAGATTTCAAAGCCTTTATTGGTGAGGCAGATCTTGTAGGGTATAATATTTCCTTTGACATTAAATTTATTAATTATCATCTAAAACAATTAAAGTTGCCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGTCTAATTATAAATTAGAAACAGCTCTACCGGCCTACGGTATTAATGAGGAAGTTCCTCATAGGGCTTTAGCTGATGTGCATTTGATTTATCGGTTAGCGTTAAAAGTAAATAAATTTTCAAAATTTATGAATAAACAGTCGCGTCGTTAAAGGGATCCTTTAGT # Right flank : AAGCCATATCTTCTACATATAGCCAACAAAGAGATTAAGTTGCAATACCGGGAGCTTTTGAAATTTGATAGCTAGTGATATCGCTTTTTAGAAGTTTTTCTATTTTGCTTGTATCTATAATCAAAATCATCTCTTCTTTCTATCAAATGTTAACCAAACAACTAAACAACAAAGCATAACAAAAATAAATTCTTTCATGATAATAATTCCTTTCTATGATAAGATAAGGATAGGAAGAGGAGTGGTGTCTCCTCTACATCCTTTAGACGATTTACTTACTCCTGCTCGGAAGGTTGATCGTCTTTTTCTTTGACTTTAAGTACTTCGATTAGCTTAGCAATTCCAGCAATCAAAGCACCAAGGCCGCCTGTTACACTTTTCCCGCACATGCGGGGGTGATCCTAACTATTTTGGGATTAAAGGCGACGGGGTCGTGCTTTTTCCCGCACATGCGGGTGATTTTGTTTAATTGTTATAAGATTATTTTTATAATCTTTCTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 377139-376683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPA010000002.1 Aerococcus urinae isolate Au-44-B14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 377138 29 100.0 32 ............................. GGTGAGGAAATATTAGTTGAATCTGCATTTTT 377077 29 100.0 32 ............................. CACTAGGTTATCCAATCGCCTATGGTTATACA 377016 29 96.6 32 ............................T GGTTTACGTAAGCCACGTTGTGCTAAAACATA 376955 29 100.0 32 ............................. GGTAATGTCGAAGGCAACCAACAAGCTGAAGA 376894 29 100.0 32 ............................. CAAGGCTGAACAACAAAAAGAAGATTTTGAAA 376833 29 100.0 32 ............................. GAGAAAAAGATGATCTCTATTATCACCTTAAC 376772 29 96.6 32 ........T.................... ACTTATGAAGACGATGGCACAGGGAACTATTA 376711 29 82.8 0 .............GC.....A...CC... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 CTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAAGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGCCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGAATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGCCGAGTACAGACCAAACGCTTGCAGCATTATAAATGCTAGCTAGGGCTCTCGTTTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGATTTGATAGGGATCCTTTAGT # Right flank : TATAAGCGTTGATTACTCATTAGGACAAACCAATACAAAAGATGGGGTGATTTATATGTCTAAAGAATCTGTTATTAGCGTAAAGGTTGACGATGAGCTGCTAGAAAGTGTTGAGACAATTTTAGATGACTTGGGACTTGATATAAATACGGCGATTATCATGTATCTAAAAAAGGTTAATGCTTATCAAGGTATTCCTTTTGACTTGACGTTAAATTAATTGATAGGGATATAAAAATAGCCTACTATATTATATAGTAGACTAGTGATTATCTTCATATGCTTTAGCTACCAACATTATATAGTCAGCCATGGTAAGATCAAGCTTTTTTGCTTGGTCTTTTAAATATGCGTGTTCTTCTTCTGTCACATAGGCATTTACCTTTTTACTACGCTTGCGACCAGTAGCAGGGCGACCACGTCCGCGCTTCTTCTTAGTAGGTTGTTCGTTCATTGGTTGTCACTCTTTTCTTTTAATGATGTAATATAAATAACCAAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //