Array 1 163368-160837 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNE01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163367 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163306 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163245 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163184 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163123 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163062 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163001 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162940 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162879 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162818 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162757 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162696 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162635 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162574 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162513 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162452 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162391 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162330 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162269 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162208 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162147 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162086 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162025 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161964 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161903 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161842 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161781 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161720 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161659 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161598 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161537 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161476 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161415 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161354 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161293 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161232 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161171 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161110 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161049 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160988 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160927 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160866 29 93.1 0 A...........T................ | A [160839] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181490-179875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNE01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181489 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181428 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181367 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181306 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181245 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181184 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181123 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181062 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181001 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180940 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180879 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180818 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180757 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180696 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180635 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180574 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180513 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180452 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180391 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180329 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180268 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180207 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180146 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180085 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180024 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179963 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179902 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //