Array 1 26400-27908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOCE010000028.1 Bifidobacterium breve strain MSK.22.99 NODE_28_length_27948_cov_431.872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 26400 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 26467 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 26534 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 26603 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 26670 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 26737 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 26803 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 26870 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 26938 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 27006 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 27073 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 27142 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 27211 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 27277 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 27343 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 27410 33 100.0 34 ................................. CAAGGGTCCGCACTTCCATGGTTCTACTCCCAAG 27477 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27543 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27609 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 27675 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 27741 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 27807 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 27875 33 78.8 0 ....................T..CTG..C..TA | T [27894] ========== ====== ====== ====== ================================= ==================================== ================== 23 33 99.1 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55838-53853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOCE010000018.1 Bifidobacterium breve strain MSK.22.99 NODE_18_length_55947_cov_439.731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 55837 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 55770 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 55701 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 55632 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 55563 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 55496 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 55429 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 55361 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 55294 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 55227 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 55160 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 55091 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 55024 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 54956 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 54890 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 54821 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 54754 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 54688 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 54621 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT G [54607] 54552 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 54487 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 54420 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 54353 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 54287 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 54219 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 54152 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 54084 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 54018 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 53952 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 53885 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCG # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //