Array 1 3355772-3354294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHE02000003.1 Lyngbya confervoides BDU141951 Scaffold_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 3355771 29 100.0 33 ............................. CCTCACCCAGTTAGCCCACTTTGAATCCCTAAA 3355709 29 100.0 35 ............................. ATCATTCGGGCTACCACGTCGGACGGCTGAATGAC 3355645 29 100.0 34 ............................. TGTCAGCGGTTTGCAGGGAATTAACCGCAAAAGC 3355582 29 100.0 34 ............................. GAGTCATAACCATGCCCGCACTTACTCGACACCC 3355519 29 100.0 35 ............................. CTCGACATACTGACAGCCACCAAACACCGAGATTA 3355455 29 100.0 34 ............................. CCCAGTCTGATTTAGGCGGCTGATTTTCCCAGCA 3355392 29 100.0 34 ............................. TCCCAGCACCGCCGCGTTGAGCGTGAACCATTCC 3355329 29 96.6 34 ............................A GACAACGCCTAGTTATGAGAAGAAAGTGCCTAAC 3355266 29 100.0 34 ............................. TTTTACCGCCACGCTGAAGAGAGGCTGGCAAAGC 3355203 29 100.0 34 ............................. TTATCCCACGTGCCCCCAGCGTCCCTTGCTGTTT 3355140 29 100.0 34 ............................. GTTGACTACTCTACCTTTTCCCTGATCAGTCCAG 3355077 29 96.6 34 ............................A GGCGATCGCCAAGTTTATGTCGGGCTCTCTGACG 3355014 29 100.0 34 ............................. CCAGCGCCACGGGGGAACCCGGGCGACCTACCCC 3354951 29 100.0 34 ............................. CTTTTTCGGCACTGGCCGATACCTTCGAGCAGGC 3354888 29 100.0 34 ............................. TCTGCCAAGTCTGCCTTATAGACTTCGTGACCGC 3354825 29 100.0 33 ............................. GTCTTTGTAGCCGTGATTGTTATTGTTGCCTCC 3354763 29 100.0 34 ............................. AGGTTGAAGTTGACTACAACTTTGACCTTGAGGA 3354700 29 96.6 35 ............................A GATAGCGCGATCTCTCAAGTTGCCGATGGACGGGC 3354636 29 100.0 34 ............................. ACCTTGTGATTGCTGCTTTTGAGGCGGCAATCTT 3354573 29 100.0 34 ............................. GCTTTCGCGAAGCGCTGTATGCCAACGCCGACTA 3354510 29 100.0 33 ............................. CCAAACGCAGCAAACGCCGCAAGCGGCGGGAAA 3354448 29 100.0 34 ............................. ACGGCGTAGAAAAAGCCGACGCCATCATCCCCGA 3354385 29 100.0 34 ............................. ATTACGCTCCCTCCCCGATCTAGTCGAAGGCTGA 3354322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 24 29 99.6 34 GCTGTCCCCACTCAGGTGGGGGTGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCGTGTAGGGGCCGAGTGTGGCTGAGGCGATCGCCGTACCTCTCAACAGTAAGGTTATGCCCGCGATTGGGACATTGGCAGAAAGCGTTTAGTCTAATAAGGCAATGGATTTATCCACGAAGATGGCTGAGTGATGTTTTCATTCAAGCTCGACGTCAAAATTAGGCTCAGCTGAAACCGCTAATTTCAAGGTTTATCTTCGTATGAATATGAGCTCGACTTACCGCTTTTGAGATGCAGCAGCGCACTACCGTCGTAGAACGATTCTCAACCTTTATTCAATTTGCGGAAGATCGCTTTGATCGCTGGATTCGCGACTTGCGCTTGCATCAAGGTATGAAAAAGCAACTGGCCCAAGGGGAGAATGCGGCCCAACTGGACGGCTTTTGGACGTTGTATTGGTACAAGCTATGGCACAGTAAGGGCCACGATCGCGCGGCGGCGCATCTGAGTGCTTATCTACAAGAACCCTGCTATTGGGCAGCACAAAGCATTACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACTCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGTCCCCACTCAGGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3358748-3356642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHE02000003.1 Lyngbya confervoides BDU141951 Scaffold_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3358747 29 100.0 34 ............................. TTGCTTTTGCACCAACCGAGTATCAGGATTCACG 3358684 29 96.6 35 ............................C CACCCCGTCGATAATTAACTGCACTGTGTCCAAAC 3358620 29 100.0 33 ............................. ATCCCACTCAATCGCTGCAATTGGTGCCCGGTG 3358558 29 100.0 34 ............................. CGCGACTATCAGAAGTTCACGAACCGAATCATCC 3358495 29 100.0 34 ............................. CTGTCAAACCCAGTCGGCCAGACTGCCCAAAGGA 3358432 29 100.0 34 ............................. TCATCAATCCTCACTCACCTGCGCCGAGGACTCC 3358369 29 100.0 33 ............................. ACGACACTAAAATCCTGCAATCCGCCAGCACGG 3358307 29 100.0 34 ............................. TCATGTTTGCCCCACCCGTTCTCGACGTGTAGCC 3358244 29 100.0 33 ............................. CACTTGTAAGCACCCGATTCAAGCACCGATAGG 3358182 29 100.0 34 ............................. CCGCCCCCGACTTCAGGAACTGGCCGATCGCCGC 3358119 29 100.0 34 ............................. GGTTTCGGATTACAGCAGTTGGGGTCACAGGAAA 3358056 29 100.0 35 ............................. CCTTGGAGTGGGCGATCGCCAACCTGAAGCGCAAC 3357992 29 100.0 34 ............................. ATAAGGTGCCCATCAAATGTGACGATTAGCCGTA 3357929 29 100.0 34 ............................. GATATGGGGGATGCCGTAGAGATTGATGTAGCTA 3357866 29 100.0 34 ............................. CTGAAGCCTATGCGCGGCGAGTGCGGATCATGGC 3357803 29 100.0 34 ............................. CCGCAAAAGCATGTCTACCAGCAAATCACCGTTG 3357740 29 100.0 34 ............................. AATCTCGGAGTTTGCCCCGATTCTTGACGGAAAC 3357677 29 100.0 36 ............................. AAGCGGTTTCGCACTTGGGCGCGTTCTGCCATGTAC 3357612 29 100.0 34 ............................. TGTCAAAGGCGACGTGATAGTCCGGCGACTCTGG 3357549 29 100.0 34 ............................. CTCACTCATGACGGTTAGATAGATGGGTTTCCGC 3357486 29 100.0 33 ............................. CTCTCCCCATTCAAGAATCCAGGCTTGATGTAG 3357424 29 100.0 34 ............................. ATGTATTGACTTGCACCCTGACACCGAAGTCAGG 3357361 29 100.0 33 ............................. ACGAACTCGGAGAGTTGGGCGAAAATGCTGCAA 3357299 29 100.0 34 ............................. CCTGATTCTCTCGTTACGACTACCACGCTAAAAC 3357236 29 100.0 34 ............................. GGGGGAAGGCGACCTAAACGACCTGCTCGACTGC 3357173 29 100.0 34 ............................. CTGAGCCAGTCCGAAGCTGTGGAGCGGATGCTGA 3357110 29 100.0 34 ............................. TCTGCTCGCTCAACAGAGGCCATCGACCTGGGCG 3357047 29 100.0 34 ............................. CCAGGATGCAAAGTCGACACCGTGCTCATTTTGC 3356984 29 100.0 33 ............................. TTCCTTTTCTGGACCGGTTGCCGACCAGAGGAA 3356922 29 100.0 34 ............................. CGCTCGTACAAAAGTTAAAAGAAGACCCCTATTA 3356859 29 96.6 34 ............................T GCCCATTCACATAAGAAAGACACTGGGAAATTAC 3356796 29 100.0 34 ............................. GTCAAAGCAGCAACCGACCGCCTATTGAACAACA 3356733 29 100.0 34 ............................. TCCACTTGGCTGCCTGCAGTGGCGATCGCCATTC 3356670 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 34 29 99.8 34 GCTGTCCCCACTCAGGTGGGGGTGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACTCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGTCCCCACTCAGGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3367001-3360802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTHE02000003.1 Lyngbya confervoides BDU141951 Scaffold_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 3367000 29 100.0 34 ............................. GCAATGTCTCTCAGGTCGAACGGGTCAACCACTT 3366937 29 100.0 33 ............................. GCGTTTCTCTTTTCGCTTCGAGAATGTTGGTAA 3366875 29 100.0 34 ............................. GGTGGATAAAGCCCACATCGAGAGACCTTGAGCG 3366812 29 100.0 34 ............................. CGCCAGGGGTCTTTCGGCGGCATTGATTCTCGGC 3366749 29 100.0 33 ............................. TGTGAGTGAGCACTGCCGTCGCGCTGGTAGATG 3366687 29 100.0 34 ............................. TCAGTTCCCAGGTTTGAACCAGTGGCCCCAGTAC 3366624 29 100.0 34 ............................. CTTTCCATTGAGTCATTGCAAGCGGGACTGAGGG 3366561 29 100.0 33 ............................. TTGCGAGCGCTAACTCCAAAGTAAGCAATACTC 3366499 29 100.0 34 ............................. GGCTGACGGGCACCTTTACGGTGACCAGTGACCC 3366436 29 100.0 34 ............................. CCATTGCCCGCCGTGCCCGTGGTGGTGGCCGTGC 3366373 29 100.0 34 ............................. TGCCTACCGCTTGCTTTTGGGCGTGGGTCGATAG 3366310 29 96.6 34 ............................T CCTGAAACAGTTCATCAAAGCCCCAATCCTCCAG 3366247 29 96.6 34 ............................T TCCCTTGCTCAAGTCCCACGCCCAGGCGTCCGAC 3366184 29 100.0 34 ............................. GCGATCAGCCCCTCCGCAAACTGGTCAAAGGCAT 3366121 29 100.0 34 ............................. TTAAATTGCGCGTTCAGGTGTGAGCCTCTCCCCC 3366058 29 100.0 33 ............................. CCGTAGATATTCATAAGGTCATCAAAGCCCAAA 3365996 29 100.0 35 ............................. GCTATCCCAGGCTCGATCAAGCTGTGCTCCGATAC 3365932 29 100.0 34 ............................. AAGTGGAGGACGAAGCGGTCAATGAAATCGTGGA 3365869 29 100.0 34 ............................. AGGATGACGCGCCCAAGGGTCGTGAAAATTTCAA 3365806 29 100.0 33 ............................. AATGTCATCTCACGCGGGGAGCGCTGGGCGGCC 3365744 29 100.0 33 ............................. GTATCGGCAAAGTCGTGCGGCTAGTCGTCCAAA 3365682 29 100.0 34 ............................. AGTAAACCCAAAAGTCGCGGCCCAGGTGGACGAA 3365619 29 100.0 33 ............................. GGCTGACCATCCAGCCGCACCTTAACGCGATCC 3365557 29 100.0 35 ............................. ACTCCATCAGGCTTTTCAGAATCAATGCGTTTTTG 3365493 29 100.0 34 ............................. GCGTGGGAATATCTAGTGCTAACCCTAGGCGCCG 3365430 29 100.0 34 ............................. GATCACCTTTAAAAGCTTCTAAATCACTATATAG 3365367 29 100.0 35 ............................. CCATATTTGACTTCCCCGATATCGCCAACAGCGCC 3365303 29 100.0 34 ............................. GGTCATCACAAACCCGTTCATGGAAATCCCGAGG 3365240 29 100.0 34 ............................. TTTACCAGCTCCTGGTGAACCGCAGCGATCGCCC 3365177 29 100.0 34 ............................. TGCGACCCGTGCAGCAAGCTCGATGAAATCTTAG 3365114 29 100.0 34 ............................. TCATCTAGCGCCTTACCGATCGCCCCGCCAATAG 3365051 29 100.0 34 ............................. GTGTTCAAGCTCAGAACCGATGATGGTGAAGTCC 3364988 29 100.0 34 ............................. CTGGTGAAAGCCCAGTCTCGGAATATTGAGGTGC 3364925 29 100.0 34 ............................. TATTGACGAATTGATGGAGCAAGTCGAGCACCAG 3364862 29 100.0 34 ............................. GACGCCAAAGGTGCCGCCTACAGTGCATTCGAGA 3364799 29 100.0 34 ............................. CGGATGGATGAATTACTAACGAAAAATGAAAAAC 3364736 29 100.0 33 ............................. CTCCACAAATCAGCTTTGAGAAAGGCCTTAAAA 3364674 29 100.0 34 ............................. AGGAATGTCCATGATCATCATCATCTCTGAAAGG 3364611 29 100.0 34 ............................. TATTACGTGAATATTGGGGGCGCTGTTGGTGACG 3364548 29 100.0 34 ............................. TCATAAAGATATTGCCTGCCTTCTGTGGGTCTGA 3364485 29 100.0 34 ............................. GTGAGCTGGTCTTTGAAGAGCCGCAAGCCTTTGA 3364422 29 100.0 34 ............................. CCTTGCAGCGCTTCACCGTATCTTCATTAACTTG 3364359 29 100.0 35 ............................. TCCTGGCAAGTGGCTTCGGCGCTGGCGTCGGATAC 3364295 29 100.0 34 ............................. TGCGGTTTGATGTCTTTAGCAGTGGAGCGGCTGA 3364232 29 100.0 33 ............................. GACTCTCAGAGCAACGCCCCTAGAGTCCCCAAG 3364170 29 100.0 33 ............................. CTTGATACACCAGTGGTTGAAGCCGATTCGATG 3364108 29 100.0 34 ............................. CTGTTGACCGCCCCGGAGGGATTCGCAATCGTGC 3364045 29 100.0 33 ............................. AGCTGATCAACTTCAACCTGACGGCAACAGTTA 3363983 29 96.6 34 ............................A GTCGCCCTCGATGTCGGTGTCAGCAGTATTTATA 3363920 29 100.0 34 ............................. GAACCCATGGAAAGTAAAGAAGCAATGGTGAAAC 3363857 29 96.6 34 ............................A GCAAGCAGCATTGTTCGCGCTGGCACGATGATCA 3363794 29 100.0 34 ............................. GTTGCAGCTTGGCGCAATCTTTGACGGCGGGGGC 3363731 29 100.0 34 ............................. AACTACCGCTAGACCTCAAAACCTTCAGCCGAAA 3363668 29 100.0 35 ............................. TTTGGTCAGGCCAGGTTTAGATGATGCGCTACTAC 3363604 29 100.0 34 ............................. GTTTCGTCACAGCAGGCCATATCATCCTCTGGTG 3363541 29 100.0 34 ............................. TCTCACCACGAAGTTTTTTGTAGAAGTATTAGAA 3363478 29 100.0 34 ............................. CTGTGAGTCGAAAACCCTTTGTGGGAGAGGCCAG 3363415 29 100.0 33 ............................. CGGTTTACAGCAGTCGGCAACTGAGGCGATAAA 3363353 29 96.6 35 ............................T GTCGAGAGCAGTCATGCGGCCCATCGTTGTATAGT 3363289 29 100.0 35 ............................. CCCTAGAGAGTCGCCTAGGTTACGAAGCCCTCCCA 3363225 29 100.0 34 ............................. GTCACAGCCACCACGCGAGATTTAGCCGTAGTGC 3363162 29 100.0 34 ............................. CCCACATCAAGAGCCTCTGAGCGAGCAGAGCTGC 3363099 29 100.0 35 ............................. AAGTCCACCTGATACGGCAGTCCAGCGAACAGGGC 3363035 29 100.0 34 ............................. GGATTAACGGTGACGGCACGCCCAAGGCGAGAGG 3362972 29 100.0 34 ............................. GGCGTTCCGGCAGAGGTTTTCAAGTTCATCTGCC 3362909 29 100.0 34 ............................. CGCCCGAGCTAGAGCTAAAGCGTGGCCGCCTAGA 3362846 29 100.0 33 ............................. CCACAATCTCGGTGCAGTGCTCGCCAACGCGGA 3362784 29 100.0 34 ............................. GCATTCCCTAACCCTCCCGGGAAGTTAGAAGGCC 3362721 29 100.0 34 ............................. ACGGCGAACAGCTTATCTTCAACAGTGCTATAGG 3362658 29 100.0 34 ............................. TGAATGGTAACAGTTTCCAGAATTTAACGAGAGC 3362595 29 100.0 34 ............................. TCTCGTCTGTGGCGCGCGGTCTTTTGTCCGGCCC 3362532 29 100.0 34 ............................. GCGCTAGTCGGCCCCTCATCCACCACTGCCGACA 3362469 29 96.6 33 ............................T CTTGCCAGAGATCAGGCTGTTGGCATTGGCCTC 3362407 29 100.0 34 ............................. TGCATCATTTCTGTCAGCCCTGCCCAGTCAGGGG 3362344 29 100.0 34 ............................. ATTGCGAATCGGGCATCGCAGGCCCAAACCGACA 3362281 29 100.0 33 ............................. CCTTTGCCATTTATTCAAAGCTGATTGATATCC 3362219 29 100.0 34 ............................. GCTTCCATTAATCAGTCTCTTGAAGTGATTCGAT 3362156 29 100.0 35 ............................. TCTTCCCCGAGCTGGGCAGTTTCATCTTGCAGTTC 3362092 29 100.0 35 ............................. CGTTAGCCGAGCTGGGAACGACCACTTACAGAGGC 3362028 29 100.0 35 ............................. CGCTTCAGTGAGGTCGTGATCAGCGGGCTTGAAGC 3361964 29 100.0 34 ............................. GGAGTCCTTCTATGAGTGCTTTACGATTCCTGAC 3361901 29 100.0 35 ............................. ATCACCTCAACCTCCTCGACAGGCAGCCCTTGTGC 3361837 29 100.0 34 ............................. CAGTCAACCTAACACTGCCCGGTAGTGATCGCGT 3361774 29 100.0 34 ............................. TCTGAAGGCAAAGAACAAGAAGACTCCTATCCCC 3361711 29 100.0 34 ............................. TAGCACAGGAAAACCGATTACAGCATCAGAGGCC 3361648 29 100.0 34 ............................. GTCTATCGCCCTCGTCGCCGCGTTTACACCTAAT 3361585 29 100.0 34 ............................. CGGTTAAGGTGCCAATCTGAGCGCATTTGAGCGG 3361522 29 100.0 34 ............................. TATTACGTTCATATCGGTGGCGCAGTTGGTGATA 3361459 29 100.0 34 ............................. CCGCTTTCCGGTACTTAGAGTCTCAACATGAACA 3361396 29 100.0 34 ............................. GTTCAGAAGTGGGAAAAGGGTCAGGAAAACCATC 3361333 29 100.0 34 ............................. AATTCCTCTGAGGCCAGAATTTTCCAAAAGGTGG 3361270 29 100.0 34 ............................. CAATTTCCACTGCCAATGACTGTCACGCCTGTGC 3361207 29 100.0 33 ............................. CGTCATCAGGGACAGGGGTGCCATAAGGGACAG 3361145 29 100.0 34 ............................. GGAATCAAGCAGGCTCAGAATGCTTACCAGGTTG 3361082 29 100.0 33 ............................. AACTGCTGATACAGTAAAGGTGCTGTATCAGCA 3361020 29 100.0 34 ............................. TATCCAGAGTCTTCAGGGTTCCAGGGGATGCCAG 3360957 29 100.0 35 ............................. GATGAATCCACATTCTTACCCTTTTCCCGTTGTAG 3360893 29 100.0 34 ............................. ACATGATAAGCCGCTATCTAAACTTGCGGTAAAG 3360830 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 99 29 99.8 34 GCTGTCCCCACTCAGGTGGGGGTGAACCG # Left flank : ATAGCTACTTTGACCTCGATCGCTTCGTCCGTCATCGTTGCCACCGCCACTTTGCCGATGTCCGACTCATGCATCGCATCGTTAAAGATATCGACCAGGTACTAGGGTTCAACACAGAGGAGGAAGAAGAGCCCATCTGCTTTCTGTGGGATGACGTCTTGGAAACTGTGGAAGGGGGCAAAAACTGGTCAGATGACGAGGAGGCCACATGATCGTCATTGTGCTGGAAAATGCCAAGCCTTCGTTGCGAGGGGAAATTAGCCGCTGGCTCTTTGAAATCAAAGCTGGGGTCTTTGCTGGACGGATTTCGGCCCTCGTCAGAGATGAACTGTGGACGTTGATTGAGGACAAACTCGGCAACGGGTCTGCCGTCATGCTCTATCCTCAGCGCAATGAACAGGGCTTTGATGCCCGAATGCTAGGCAATCCGTCAAGAACCCTCGTAGACATAGAGGGTATCCTTTTGGTCAAAGTCGAGTAATTTCAAGTATTTTGTAAGT # Right flank : CGCCGTCTACATTCAGGGCCAACACGGGCACACCGCTGTCCCCACTCAGGTGGGGGTGAACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCCCCACTCAGGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGTCCCCACTCAGGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //