Array 1 6762-5722 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTYJ01000011.1 Paenibacillus polymyxa strain CCI-25 contig_011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 6761 32 100.0 33 ................................ TCTAACAAAACGAAGTTCTTCACCTTATGTTCA 6696 32 100.0 36 ................................ ATTTAGGGCTAATGGTGCCAGTCACATCGGCATACA 6628 32 100.0 35 ................................ ACCAAACGAAATGTGCATCGCATCACCTCCTTTCG 6561 32 100.0 34 ................................ ATTTTCGGCATATACTACTAACGCCATTTCTCCA 6495 32 100.0 35 ................................ AAGACGCAACAAAGCTAAACGCTATTGAACAGGAA 6428 32 100.0 34 ................................ ATTTTTCTTGTGCATCGTTTTATTTCTCCTTGAT 6362 32 100.0 35 ................................ GGATCCGTTATCGACGCCAACGGCGCATGGCTGAC 6295 32 100.0 33 ................................ TTCCAGCAGGGCATCTTTAATGCCACTAATACT 6230 32 100.0 35 ................................ ATATAAGACCTCCTAGTAGAAAAGCCCACCTTTTA 6163 32 100.0 36 ................................ TGTATAGACCGTGTGCGGTGCGAACACATAGTAAGG 6095 32 100.0 38 ................................ CTTGGATGATCGCATTTACAGCCATACGGCGAACGCGC 6025 32 100.0 36 ................................ AATATCTTAGGCAATTCCTCGCACAATTCAGGACAG 5957 32 100.0 36 ................................ CGCAAAATGAAAACGCGAGAGCAACAAGCAAAAATC 5889 32 100.0 34 ................................ GTCATGAGTCTAGCCGGGGTTGTCATAAGTGTAA 5823 32 87.5 37 .........TG.A................T.. TATCTTGCCGTTACTATTTGTGTAGCAGAGGTGCTAT G [5808] 5753 32 84.4 0 ......T...................G.T.TG | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 98.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTTGATCTTGTTAATACTAATTACGTATGATGTAAGTACATTAGATAGAGAAGGCAGAAAAAGACTGGAAAAGGTTGTGAAAAGGTGCGTAGACCACGGACAAAGGGTGTAAAATTCCGTGTTTGAGTGCATTTTGGATTCGACCCAGTTCCGCCGTTTAAAATATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGTTTCTACAACTTTGGAGATAGCTATAAAAAGAAAGTAGAGCAATAGGGGCTAAGGAAGCTTACGATATGGAAAGCCCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTATTAAAATTGCTATTTAACCGTAAAAGTCAATAGTTGATCCAAGCTTATTTGACATCAGTTTTTGCGACAATGTGTAGAATTGATATCATAAGGGTATCAATTACTGCATTTTCGCT # Right flank : AAAAAGAAGGCTTGTTTCGTGGCCTGCCCAGCAGTGAATAGGTGCAAATTTCTTCTTAACGGATTTCTTATTCGACAAATTCCCCCTTACTTTTATGCAACAATTAACTAACATTTACAATGGTTGAAGTATAAATTAAGGTGGGAGTTGCTGCTTATGAGAATTTCCATGAGTAAGTTTTTAAAGCGCTATGCAGCGATTTTGTTGGGCTACGCAATATGTATAGGGTTATTTTACGCTTTGGGATATAAGATGAGCGCTATGGGAATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGTATTATCAAAGCGAGAGAAATGAACCTAGGTATCCCCTGATTGCATCAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCAACAGAGTTTCTGCACGGGACCTCTATATCATTTACTGGTGAGAATGCACATAGGGAAATGAATCCGTCATGTCAACTCTGTGAAACCTTTTATTTCGGCAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8307-7871 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTYJ01000011.1 Paenibacillus polymyxa strain CCI-25 contig_011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8306 32 100.0 36 ................................ TGAGTCGTCCATTGTAAGAATGCATGTTGAGTATCC 8238 32 100.0 35 ................................ TGTGCTGTCCTGGCGCACCCTTAACTCGCTTACCT 8171 32 100.0 34 ................................ CAATACCGAAATGATGGGGGGTGGAATTATTAAA 8105 32 100.0 33 ................................ GGATCAGGAGCAATGGGCATAGCATCCGGTTCA 8040 32 100.0 36 ................................ ATCCAACATCAAGGGGTGACATCATGATGAAATTAA 7972 32 100.0 36 ................................ GCGTATCCAGACGGTTTATGCTCGGTGTAGCAAAGA 7904 32 90.6 0 .............................CGG | AC [7874] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.7 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAATGCAGCCGGTATGATGAACAGGGTTAATAACTCAACTTTTGCAGAACGTCTTTATGAAATATTTTACAATACCTTTATGTTTTTTGAAAACATAAAGGTATTTTTCTGATCAATGTAGTGGATATTTCTGGATGCATTTACCCAAAGCCAGAACGTTTAGCTTTGGAGTTAACTGGTGGAACCTTGCTTTTAAATGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTCCTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGAATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGTTTCGCACCTCAGATTTTGTCGAATTATATCGAATGTGAACAAATTTTAAACGATCGCAAGAGGATGAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGTTACTTAAATAGGGGGCATTTGACCCATTATCGCT # Right flank : AGCAGCCGCCACTTGGTCGTACGAGTGGAGAGCGCCTCTTTATCCGAAATCATGAAGAGGTCCGTGAAGTGAGGAGCTGGAGATTTTACGCGGTTTGGAGGGGACGGCGGCAGTTCAGTACAATTCCGTGTGGGATGATCTGATCTTGCAGCAAAAAGATGATTTTTATTTCCATGGACGCCATAAGCGCCCGCCGTTAGATAACGTGAATGCCCTATTATCTTTTGCCTATACACTGTTGTCCAACGATATGAAATCCGCACTAGAAGCTGTCGGTCTATGCTTATGTAGGTTTTCTGCATAGAAGATCGTCCAGGGCGAGCCTCCTTGGCACTGGATGTGATGGAAGAGCTTAGAGGAGTATATCCCGACCGTTTTGTTCTTACATTATTAACAAAAAATGATTCATGGCAAAGGATTTTACAAAAAAGAAAACGAGGCTGCTATGATGGACGATGATACGAGGAAAATCGTATTGAAGGCATGGCAAGAACGGAAAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 15094-12864 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTYJ01000011.1 Paenibacillus polymyxa strain CCI-25 contig_011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 15093 33 100.0 36 ................................. TGAGTTCTAGCAATAAACAGATTTTGATCATCCGAA 15024 33 100.0 34 ................................. TGAAAAGATAGATACAGATACCGCTATGGGTCGA 14957 33 100.0 35 ................................. TTTAAAGCAGGAGCATACTTCGATGATGGGACAGC 14889 33 100.0 35 ................................. CGTAAGGGCGGACGGGAACGTCATCCCTCCTTTGC 14821 33 100.0 40 ................................. TGGTATTCGTCCGCATATTTAAACGCAAAAAAGCCGCCCG 14748 33 100.0 37 ................................. AGACTTCTCGATTAACTCGTAATCAAAACCCTCAATA 14678 33 100.0 34 ................................. TTTTCCTACAAGGGTTCAGGCGTGGGCGGATCTG 14611 33 100.0 33 ................................. TTCCGGCGTTAGCTTTTTCGGACTATCGTCGTC 14545 33 100.0 35 ................................. ATCGGCAGTCAAGGCGGTGCGTTTGCCAGGGTTGA 14477 33 100.0 34 ................................. TCCTATGTACGTAGATAAGAAACAAAGTGTGATT 14410 33 100.0 37 ................................. CTTTTTTTTTGTGAAAGTACAAGCTGTTTTTTATAAG 14340 33 100.0 36 ................................. CATTTTTGTTTTGATCTACAAATGTTTTTAAGTCTT 14271 33 100.0 38 ................................. ACCCCAGTCTTTATAAGGAGCTGTGAACAGATCATCTA 14200 33 100.0 35 ................................. CAGTACACAAAAAAATAAACCTCAGATTAATCCGA 14132 33 100.0 35 ................................. TCAGTTAGAAACTGGTCAATATTTTTAGGATTCAT 14064 33 100.0 35 ................................. TGCGTAAAGAGTTCGACAAGAAATAAGATTTTCAA 13996 33 100.0 33 ................................. CTCGGTGCTGACGCGTCCATAACCAGCAGCACG 13930 33 100.0 37 ................................. GCTCAGGCTCGAAATGGACGGTTCAGGCGTCCCGCAG 13860 33 100.0 38 ................................. TGTAATGGCAACCTTGAGCGCACCGGCCTGGGTGAGCG 13789 33 100.0 37 ................................. GCTCAGGCTCGAAATGGACGGTTCAGGCGTCCCGCAG 13719 33 100.0 38 ................................. TGTAATGGCAACCTTGAGCGCACCGGCCTGGGTGAGCG 13648 33 100.0 37 ................................. GTCCATAGACCTAGCACCTACAGCAAAAATTCCTGTC 13578 32 93.9 37 ..........A....-................. GCTTCGGAATCGGTCAAACGCCAGTGTGGGCCAAGCC 13509 32 93.9 36 ..........A....-................. TCATTAACCACGGTCGATTGATCGTAACACCTAAAC 13441 32 93.9 34 ..........A....-................. TCTCCATGCAACGGCCTGATAGTGACGTGCTGGA 13375 32 93.9 36 ..........A....-................. GATCTGGTTGTCCTCGACATCCGCGGTGGATATAGA 13307 32 93.9 36 ..........A....-................. TGCATTAGATGAGTGATCACGTTCGGCCTTACTATA 13239 33 100.0 38 ................................. AGACGTAAGCCACCAAGCAAAGAAACAATTCTCCCAGG 13168 33 97.0 36 ....................T............ TATTACGTTCGTGAGTTTGGTGATTCTGTCGCTCTG 13099 33 97.0 34 ................G................ GACACAAGAATTCGACAGACAGGAAGGAATTTCC 13032 33 100.0 35 ................................. GAGGTACGTACGTGCTCCCGCAGTAACCAACCCCT 12964 33 100.0 35 ................................. TCGAACATGAACACGCGTGGTATCTCCCCGTCGAC 12896 33 93.9 0 ..............A.....A............ | ========== ====== ====== ====== ================================= ======================================== ================== 33 33 98.7 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGACTCGACCCAGTTCCGGCGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAAAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTATGATATGGAAAGCCCACTGATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAAATCAATTAAATCAGTTACCATCAGTAAAAGTCAATGGTTGATTAAAGCCTTTTTGGCATCGTTTTTTGCGACAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : ATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCGTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCCGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTACAATGCTCGCAATGGGCGCGATGAGAAGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGACGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTAAGTGACCGGCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTACCTTCCACACGAGAAATGAGCGTTCTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 25224-24243 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTYJ01000011.1 Paenibacillus polymyxa strain CCI-25 contig_011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 25223 32 100.0 38 ................................ ATGAACAATAAGCTGCGCCAGTACGCTGCCGAAGCGGA 25153 32 100.0 34 ................................ TGGACGTTACGTCCTGACTTTATAGCCCGCCAGA 25087 32 100.0 36 ................................ CACTGAACAGAAGGTATATGACGAAAAGCATACATA 25019 32 100.0 35 ................................ TTGCCATTCAGCTTGCCTGACAGCACAGGAACGGC 24952 32 100.0 37 ................................ CTACGAAAGGAATTACGGATAACGGAAATGAATTGCC 24883 32 100.0 34 ................................ TTTTTCGTCTTGGTCGGGTGAGGTTTGCGGTGTG 24817 32 100.0 37 ................................ AGTCAGATGAAATACAAGGTTCAAGGTATTTTAAGGG 24748 32 100.0 37 ................................ TTACCCAACTTGACGGAGGTGGTTACTGACGAACACA 24679 32 100.0 37 ................................ GTGACGTCCGTTTTTATATCAAGATGTTGAATCGCAT 24610 32 100.0 36 ................................ CTTTACCTCGCGTTTGGAAAGGTCTTCGCTGTCCAA 24542 32 100.0 38 ................................ ATAAGGATTTGATGAAACATGCTGATAAATTTGGTGAG 24472 32 100.0 34 ................................ CGATCCATGAGCATCAGCATGATAAAAACTGCCC 24406 32 100.0 34 ................................ CTCTAACGGTTCATTCAGTACCCAGTAGGCTTTG 24340 32 96.9 34 ...........................A.... CATTCCCGGATGTGATTGGTTCCTCGGTATCGGA 24274 32 93.8 0 ............G..................C | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 99.4 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAGTTCCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATCTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGACAACCGTTGGCTGATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCTGATCATTCGCGACACATTACTGGCGCACAAATTGTCATTGATGGGGCAGAGTCGTTATTGTTTTAGAAATAGAGCATTCTCTGGGACAGAGAAATGTTTTGTGGTATCCTGAGTGTATTATCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAAACCTGGATCCTTCGCACCTCGAAATTTGTCGAAATGGTTTTGAATTAGCTTTCTTCGTTAGAAATCAATAATCGATTCAAGCTTTTTTGACATCGTTTTTTTCGAAAATGCATGGAATTAATATCATTAGGGTATTAAATCCTTCATTTTCGCT # Right flank : TACGTCAGTAATTAGCGTTTTCATGCGTAAATATTTAGTGTTCGTAACCTTGCATAACAACTCTCAGCAGACTTTACATGATTGGAGCCAATATATAATTTGTTTTATGAACTTTAAGATTATTAGTTTGGTTCTCTCTAAAAATACTATTTCCACATGACTATAAATAATATTTGTATACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATACAAGTCTCTTCACAATAACCACCTAAAAGTCATAAAATGAATATAGAGCTATGGGTGTGAAACCGAAATCCTTGAATTAAGTAGATAAGAGAGGAAAGGAAGAGAAATTACAACGCTAGGACAATTATATTAGCATTATCTATGAATTCACTTAACAACCGGGGATGTCCAAGTGGGGATTGTAGATGCTGTCGCTATTTACCTTAAGGCACGATTATACAGATTAAGTATTTGCTTAAAGGAGGAAAATAGATGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //