Array 1 23941-24273 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813798.1 Rothia sp. HMSC072B04 Scaffold61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23941 28 100.0 33 ............................ CGAAGGAAACAAAATGACACGCTCCATCAAGGA 24002 28 100.0 33 ............................ GTAATGAGCACCGAAAATACCGAGTCCGTAGAT 24063 28 100.0 33 ............................ GTGGGAGAAAATCATCGACGGTGCAATGGGTGC 24124 28 100.0 33 ............................ GGCAGAGCACCCCCGCCGTGAGCACACAAGCAA 24185 28 100.0 33 ............................ CTCGCTCTGAATATCTCCTGGCGTGAAGTCGTG 24246 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GCGTTCCCCGTATGCGCGGGGATGAGCC # Left flank : TGGGCTTAATCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGTCAGCTGGAATACAAGGCCAGCTGGTACGGCTCACAGGTACAGATTATCGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCTTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCAGCCTGTGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATCCGTGCGGAGGCTGTACGGATGTATGAGGCGCAACTCGCCCCCGGCATGGGGGAGAGTCTAAACGGACGCGGAGCTACAGGCTCTGATGCTGCCGGTTCGGTGGTATTGGGGGATGTGGCGTTGGATGCGTCAAGGCCAGCCGCCACTGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCCCTTTATATATGTATACGTGTGGAAACTGAATATTTTTTAGGCTTCTGCTAGGCATCATGCCTTGTGGCTAAGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCCCCGTATGCGCGGGGATGAGCCCGACGAGAGGCCGCAGGTCGGAAGCCCCACATGGCGTTCCCCGTATGCGCGGGGATGAGCCCTCGTGCGTGACCACAACATCCGCGATAGGAAGGCGTTCCCCGTATGCGCGGGGATGAGCCCTATGATCCGGCTGATGTAGTCGGCGTGAACTGGTTTTCCCTGTATGCGCGGGGATGAGCCCCGAGGTACCGTGTTCCGTCACAACGTTCTGCGGTTTTCCCCGTATGCGCGGGGATGAGCCCTGAATCAGTCCCGTACGCAGTGCGTAGGCGTTGTTTTCCCCGTATGCGCGGGGGTGAGCCCAAGTCGAAAAGCCGGCAAGTTGCCACGCATCAGTGTTCCCCGTATGCGCGGGGGATGAGCCATTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTATGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24373-24890 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813798.1 Rothia sp. HMSC072B04 Scaffold61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24373 29 96.6 32 N............................ GACGAGAGGCCGCAGGTCGGAAGCCCCACATG 24434 29 100.0 32 ............................. TCGTGCGTGACCACAACATCCGCGATAGGAAG 24495 29 100.0 32 ............................. TATGATCCGGCTGATGTAGTCGGCGTGAACTG 24556 29 89.7 32 .TT.....T.................... CGAGGTACCGTGTTCCGTCACAACGTTCTGCG 24617 29 93.1 32 .TT.......................... TGAATCAGTCCCGTACGCAGTGCGTAGGCGTT 24678 29 89.7 32 .TT..................G....... AAGTCGAAAAGCCGGCAAGTTGCCACGCATCA 24739 29 93.1 32 .T..........................A TTGTCATGGGTATGAGACGTGGTCCCCATAGG G [24756] 24801 29 82.8 32 .TT.......C..C..............T CAGGCACACCCATTCCGTGAAGGTAACGGTCA 24862 29 72.4 0 .T........C...A........A.ATAG | ========== ====== ====== ====== ============================= ================================ ================== 9 29 90.8 32 GCGTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : TATATGTATACGTGTGGAAACTGAATATTTTTTAGGCTTCTGCTAGGCATCATGCCTTGTGGCTAAGTGCGTTCCCCGTATGCGCGGGGATGAGCCCGAAGGAAACAAAATGACACGCTCCATCAAGGAGCGTTCCCCGTATGCGCGGGGATGAGCCGTAATGAGCACCGAAAATACCGAGTCCGTAGATGCGTTCCCCGTATGCGCGGGGATGAGCCGTGGGAGAAAATCATCGACGGTGCAATGGGTGCGCGTTCCCCGTATGCGCGGGGATGAGCCGGCAGAGCACCCCCGCCGTGAGCACACAAGCAAGCGTTCCCCGTATGCGCGGGGATGAGCCCTCGCTCTGAATATCTCCTGGCGTGAAGTCGTGGCGTTCCCCGTATGCGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAGAGGCGCCGAGCCACACGCTCCTCAATCTGCGTACTTGCAGAAATGAACTGGCATGTGCCTGGTTTCTAATCCTCCGGTAGCTTCTGACACCCCACCAACCCCGCCCCTCCTGCCCCCGATAATGCCCTGATACCGCCCGCGATAAAAACCCCCGTTAAAAACACAGTCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAGCAGAAAAGAAAACTACGAAAGAGATACTTTCATGCTTATTCTCGTTGTGAACGCTGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAAGTCGCATTCGACATCATGTCCGAGAAGCTTGAGCCCGTCCTGGCAGGCCGTGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCGCCCTGCTCACCG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 214-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813808.1 Rothia sp. HMSC072B04 Scaffold109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 213 28 100.0 33 ............................ CTGCGTCAACTACTTCCAGTGGGAGGACTTTGA 152 28 100.0 33 ............................ CGCTATAGGTAGAGGTACCGAAAGCGACTAGGG 91 28 100.0 33 ............................ CGAAGGAAACAAAATGACACGCTCCATCAAGGA 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GCGTTCCCCGTATGCGCGGGGATGAGCC # Left flank : | # Right flank : CGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTATGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //