Array 1 114114-112616 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF952044.1 Xenorhabdus nematophila F1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 114113 29 100.0 32 ............................. CCACCTAAATGGTGGCTTTTGTGGTTAATTAA 114052 29 100.0 32 ............................. TTCCCTTGCGCGACCCGATAACCCCGTACTGG 113991 29 100.0 32 ............................. GCCTGCCATCTGGAACTTAGCTCCGCTCTTCA 113930 29 100.0 32 ............................. GCAATGAGCCCCGCCCCTTTTGCCAATACTTT 113869 29 100.0 32 ............................. CAACAACCGTTTTACCAATCCCGTAAGTGATA 113808 29 100.0 34 ............................. GAGTTAATCAAATCCAGACTTAACCCGCTCCGGC 113745 29 100.0 33 ............................. ACTTCCTGAATATTTGGCGCTCTCATTGAATGC 113683 29 100.0 33 ............................. GACCCTGACTCAGCCATCTTTGAAGATGTAGTC 113621 29 100.0 32 ............................. GATATCATTTCTACTGTCATCGCTGAAAATAT 113560 29 100.0 32 ............................. CCGTCGGGGTCATTGTCCGGCACGGCGTCTTC 113499 29 100.0 33 ............................. CAAAAAGGCAAATTCCGCATTGATGACCGTGAC 113437 29 100.0 32 ............................. GAGTGAAAAAATAAAACATATAGCAATAGGTG 113376 29 100.0 32 ............................. CGATCTCTGTTGATAAAATTCACGCAAACGCC 113315 29 100.0 32 ............................. ATATCTGGGTAGCAAATGCGAAATTTGGCTGG 113254 29 100.0 32 ............................. ATGATGTATCGACTAAATGCTCATTCAGTGGG 113193 29 100.0 32 ............................. GACGCATGGGATTCTGGCTGGAATATTTCGGA 113132 29 100.0 32 ............................. GGCTTTCGTGAGAAAAATAGACATGACCATAT 113071 29 100.0 32 ............................. GCACTCTATCAGTCAATAGCATCGTTGGCGAT 113010 29 100.0 32 ............................. GTTGTTGAGTCAATGAAGGCGTATGGGGGGAT 112949 29 100.0 32 ............................. TACATAACATGCCATGACTTTCGCGCAACTGC 112888 29 100.0 32 ............................. AATATCCTGTAACACTGGAACACTATTTAGAC 112827 29 100.0 32 ............................. AATCAGATTGATGCCTCATTGAAGTATATTGA 112766 29 100.0 32 ............................. GAATAACAATGCCGTCACTGGCACGTACGGAT 112705 29 100.0 32 ............................. AATCCTGATGGTTACATGCAAGTTTACTACCC 112644 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 25 29 100.0 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : ACCTCACAAATCGGTTTATCTCCGTAGGTACGGAGACCTCGATCATGGTGGTCGGTGATTTTACCTACAGCCCGGTTTATCTCCGTAGGTACGGAGACCTCCCAGAGGTGGCGGGGGGATGGCATCCGGTTATCGGTTTATCTCCGTACCTACGGAGACCTCTTCACGTTGTTCTGCGTTTGGATATAAACGAACGGTTTATCTCCGTACCTACGGAGACCTCGGTGGTTTGTTTCAAACCATTCTGGGCGTTGCCGGTTTATCTCCGTACCTACGGAGACCTCTCCACCACGTGTCAGGGGTAAAGTATCGAGGACGGTTTATCTCCGTACCTACGGAGACCTCGTCACTTTTCTGACCACCGGTGTAGTTGATTTCGGTTTATCTCCGTACCTACGGAGACCTCTCAATAGTTAAGTTTTTTATTTTTTGAAATGTCGGTTTATCTCCGTACCTACGGAGACCTCGTGCAGCGGCACCCGGTAGATACGACAAATTTC # Right flank : GAACGCCTGAATATCGTCAGCGCAGGAGACTCGTGAAGCGATGATACCACGAAAAAAAGAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAATAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTTCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114147-114785 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF952044.1 Xenorhabdus nematophila F1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114147 29 100.0 32 ............................. ACATTTCAAAAAATAAAAAACTTAACTATTGA 114208 29 100.0 32 ............................. AAATCAACTACACCGGTGGTCAGAAAAGTGAC 114269 29 100.0 32 ............................. TCCTCGATACTTTACCCCTGACACGTGGTGGA 114330 29 100.0 32 ............................. GCAACGCCCAGAATGGTTTGAAACAAACCACC 114391 29 100.0 32 ............................. TTCGTTTATATCCAAACGCAGAACAACGTGAA 114452 29 100.0 32 ............................. ATAACCGGATGCCATCCCCCCGCCACCTCTGG 114513 29 93.1 32 ............CC............... GGCTGTAGGTAAAATCACCGACCACCATGATC 114574 29 93.1 32 ............CC............... ATTTGTGAGGTGATAACATGAAATCCCCAGTT 114635 29 93.1 32 ............CC............... CCATATCTGGTTATCGAAGTCAATCTCATCCC 114696 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 114757 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : TCAGGGTCCGGTTTATCCCCGTACTTACGGGGAACACGCATTCAATGAGAGCGCCAAATATTCAGGAAGTCGGTTTATCCCCGTACTTACGGGGAACACGCCGGAGCGGGTTAAGTCTGGATTTGATTAACTCCGGTTTATCCCCGTACTTACGGGGAACACTATCACTTACGGGATTGGTAAAACGGTTGTTGCGGTTTATCCCCGTACTTACGGGGAACACAAAGTATTGGCAAAAGGGGCGGGGCTCATTGCCGGTTTATCCCCGTACTTACGGGGAACACTGAAGAGCGGAGCTAAGTTCCAGATGGCAGGCCGGTTTATCCCCGTACTTACGGGGAACACCCAGTACGGGGTTATCGGGTCGCGCAAGGGAACGGTTTATCCCCGTACTTACGGGGAACACTTAATTAACCACAAAAGCCACCATTTAGGTGGCGGTTTATCCCCGTACTTACGGGGAACACGAAATTTGTCGTATCTACCGGGTGCCGCTGCAC # Right flank : GTGGTTTATGACACAACAAGATGAAGAAGATACGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACAAGAAAATCACCAAAAGACATTTTGATAGTCATTTATTTTGATTTAGTCGATATAAAAACAAAAAATAAAAAGCCATATGAACTAAATTTATTCTTTATAGCGATAATATATCGAAAAAACAATAAACATTAAAAATAATAACAATATAAAATAATTATATTTATTAATATAAAAGAAGAATAAAACGCATTTTTTTGATGATAAAACAAACGAAAACTCCAAATTTTGCCACAAACGCCTCCCAAGCATCATTCGTCAATAATTGTCAAAAATACCAATGCTAACCTACTCTGTTTTTCATCCTCTCGCTGTTAATTTTATAGGCAATTATCTGTCAGAAATAGGAAGCGAATTAACTTATGAACGTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : GAGGTCTCCGTACCTACGGAGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237760-236691 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF952047.1 Xenorhabdus nematophila F1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237759 29 89.7 32 ACA.......................... AAACTCTCACATAGTGTAAATCACGCGGACTG 237698 29 100.0 32 ............................. CACAGGCAGGCAATCAACAACTCCCAAAACTC 237637 29 100.0 32 ............................. ACACGGAACCGTCCCGCTGTTTTTTGCGGTTA 237576 29 100.0 32 ............................. GGAATCATCCAGATTGCGTTTGGCGTTCAAAT 237515 29 100.0 32 ............................. CACTGGCTGACGATTTATTGCGTCTTGGCTGG 237454 29 100.0 32 ............................. AACGGCGCATGGAAGCGGCGGCGTATCAGGAT 237393 29 100.0 32 ............................. TATAGGCTACCTCCCCCACGAAACGCAATGGA 237332 29 100.0 32 ............................. TTTTAACTGTGAAAATTCTGTTTTAGAACGGG 237271 29 100.0 32 ............................. CCCACTTACGCCGTAAGCGGATGCTGGAAATT 237210 29 100.0 32 ............................. TTGTCCTGTTTTTTGTGAGCTGTCAAGAGATG 237149 29 100.0 32 ............................. CCAGTAGTTCCACCAATAAATTTACCAGCCAA 237088 29 100.0 32 ............................. GGGTTTCGTTCTCCTATTCACAGGGAGATGGA 237027 29 100.0 32 ............................. AATTAATTTCTGACAAAATAACCCAGTATCCA 236966 29 100.0 33 ............................. CATTCCGCGCGTTAATGAAGTTCCTGATTTTCC 236904 29 100.0 32 ............................. CCTTTAATAATTCCTGTTTTCCCTTTATCAAT 236843 29 100.0 32 ............................. GCCAGATGGATGTTGTAGATGGAAAAGCAACA 236782 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 236720 29 82.8 0 .................C...CG.G.G.. | A [236702] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : CTACAGGATGTGTTCCCCGTAAGTACGGGGATAAACCGCCTTACTAATACACTTGAATCAACTCCGCATAGTGTTCCCCGTAAGTACGGGGATAAACCGATAACCCCGGCATGGGCAGGCAGGGATGAGACGTGTTCCCCGTAAGTACGGGGATAAACCGGGAAAACTACACGGAATGTAACATCATTCAAACGTGTTCCCCGTAAGTACGGGGATAAACCGAGAAAATTTAGAGCGTTTGGCTGTGCTATATGGTGTTCTATATGAACGCATCCCGTTTGCAAGACAAAAGTTATTGTGACATTGAAGGTAGATTGCAGCTAAATGCGATCTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCTTACCTCTCAATTTCAGCATAGTACCGAGGGTTACGTGGTTGGGATGCGTTCATT # Right flank : TGAACATTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTCACCTTGCCGTAAGTACGGGGATAAACCGCTTACGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATAAGATTTCAAAATAGTAGATCACTTGAAGGGAACTCAGTCCGATTTTCGCGATCTGATTAATCGCCAAATCAAAACAAATCCCAAAATGGACTGAGTCATGCCAATCATAACATCAATACCCCGAAATGAACGACGTCAGATGAAAAAAGCTATCCAGAAAACCCGGGATAAGGACTATGCACGTCGCTTCACCGCGCTCTTGATGTTACATGAAGGGAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 239168-238038 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF952047.1 Xenorhabdus nematophila F1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239167 29 100.0 32 ............................. AATGGTTGATGTATGCCGATAGTTTATTGGTC 239106 29 100.0 32 ............................. TCACCTTGCAGTTCACCCACGGCACCGCCCGG 239045 29 100.0 32 ............................. GTGCTCAGAGCACTCGCAGAACTGTGGCTGTC 238984 29 100.0 32 ............................. GCATTATTAATCTTAAAATTGGCTCTAACTCT 238923 29 100.0 33 ............................. TAAAATAGCAATTCCCATTTGTGCTCCGAGAAT 238861 29 100.0 33 ............................. ACAAAATCCCGCCCGGTGTGACTTTGAGAAAGC 238799 29 100.0 32 ............................. GTATTTTTAATGATAGCACCAATGGCATTAAT 238738 29 100.0 32 ............................. GGTTGTTCCGGTGCGAGAGCTACAAATATCAG 238677 29 100.0 32 ............................. TAAGATGAGCAATGACGTAATTGAGCTGGCAA 238616 29 100.0 32 ............................. AAACTCTGTTTTTAAATGCTGAGTTTAATGGC 238555 29 100.0 32 ............................. CAAATTGCCTGGGCGAAATCCCGCAATTCCGG 238494 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 238433 29 100.0 32 ............................. TCATTAGGTAACGGATTATTTGAAGTCAGAAC 238372 29 100.0 32 ............................. GCAATAAGACCGGAATATGTGCCTGATGTGAA 238311 29 100.0 32 ............................. TACTTGAATTTTAATGGTACGCCCTACAGGAT 238250 29 100.0 32 ............................. CCTTACTAATACACTTGAATCAACTCCGCATA 238189 29 100.0 32 ............................. ATAACCCCGGCATGGGCAGGCAGGGATGAGAC 238128 29 100.0 33 ............................. GGAAAACTACACGGAATGTAACATCATTCAAAC 238066 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AAGTTGTTGAACACCCGCTGCTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGTGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAG # Right flank : AGAAAATTTAGAGCGTTTGGCTGTGCTATATGGTGTTCTATATGAACGCATCCCGTTTGCAAGACAAAAGTTATTGTGACATTGAAGGTAGATTGCAGCTAAATGCGATCTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCTTACCTCTCAATTTCAGCATAGTACCGAGGGTTACGTGGTTGGGATGCGTTCATTACATTCCCCGTAAGTACGGGGATAAACCGAAACTCTCACATAGTGTAAATCACGCGGACTGGTGTTCCCCGTAAGTACGGGGATAAACCGCACAGGCAGGCAATCAACAACTCCCAAAACTCGTGTTCCCCGTAAGTACGGGGATAAACCGACACGGAACCGTCCCGCTGTTTTTTGCGGTTAGTGTTCCCCGTAAGTACGGGGATAAACCGGGAATCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //