Array 1 93260-92894 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOEL01000001.1 Porphyromonas gingivalis strain MP4-504 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 93259 36 100.0 30 .................................... CTTCAGCCACTCTTGAGAAAGATAGAATCC 93193 36 100.0 30 .................................... GCTGTGAAGTATATTCCTGCTCCAGGAACT 93127 36 100.0 30 .................................... AAGTACGTCTCTGAGAAAGGCCTAAGAATT 93061 36 100.0 30 .................................... AAGTACGTCTCTGAGAAAGGCCTAAGAATT 92995 36 100.0 30 .................................... ACAGAAAACAACTAAGACAATGAAAACAAA 92929 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGGGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAATGGAATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATTCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 711-3100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOEL01000036.1 Porphyromonas gingivalis strain MP4-504 NODE_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 711 30 96.7 35 A............................. CGAATGGAAGACCGAGGGGAACCTGTTGTCGAACG 776 30 100.0 35 .............................. AAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCT 841 30 100.0 35 .............................. TTTTATATCCTTTTCGACCGACACCGCCACCTACT 906 30 100.0 35 .............................. CGCGGATGCGCATACCTTTTCCACATGCGCGAAGA 971 30 100.0 36 .............................. TACACAGCACAGCCGTAACCAAAAGCAAAAGGAATA 1037 30 100.0 36 .............................. ATTGATGAGATTATTTCTTACACGCCCGCGGAGCTG 1103 30 100.0 34 .............................. TGATTGCGAAATGGGACCTGGACAAAACGCTCGT 1167 30 100.0 37 .............................. TGGGGCAACGCAACGGTGGAGGCTTGGGGCAACGCAA 1234 30 100.0 36 .............................. GGCATATTCCCCATAACATCTTCTATAGGCTTTTTA 1300 30 100.0 36 .............................. ATACGTCTGACTCCCTTTTTTCGTCCTCTCTTTTGA 1366 30 100.0 36 .............................. GACCTTCTCCCACCTGCGGAATAGCGACATCGCTGA 1432 30 100.0 34 .............................. CGAATACGCGGCCGCGCTGGAAGCGGCCCTGGGG 1496 30 100.0 34 .............................. CTCTTGTAGAAGTCCATCGTGGGCGTGAAGTACT 1560 30 100.0 37 .............................. CATCTCGGACTGGGGCGTGCTGGACGAAGCCCCGTAC 1627 30 100.0 36 .............................. AAGTGACGCTGCGCATCTCCGGCGAGCACGCCCGTC 1693 30 100.0 36 .............................. TCTTGTGTCTGCTATTGCGGATGCGCTCAATACGAG 1759 30 100.0 35 .............................. AAGATGTTGCGATTGCGCAGGTGGGTGACGGTCGC 1824 30 100.0 36 .............................. GGTACAGGTATCAGGATATTATGAAGATCGATCTGA 1890 30 100.0 34 .............................. CGGCTCTCGAGAACGACAAGAAAACGAAGCTTCA 1954 30 100.0 36 .............................. GAAGAGTTCTTCATTCGTTGCACCCCGCTTTCCGGA 2020 30 100.0 36 .............................. ATACCGCGACCTCCTCGACTTTACACTCTACAAAAA 2086 30 100.0 34 .............................. GAGGGTTCCGTGCTTGCCTTCTCCATCGACGGGT 2150 30 100.0 35 .............................. CCCGATCGCCGGTTCGGTGGCTGCTGCTCTTCTTG 2215 30 100.0 37 .............................. CCTCTGGTTCTTGTATAGTAAAAGGTCTTAGTAAAAT 2282 30 100.0 36 .............................. CGGCCATTTCAGAGCCGTACAGGGCTTCAAATACGT 2348 30 100.0 37 .............................. TGTGACAACGCAACGGTTCGGGCTTGTGACAACGCAA 2415 30 100.0 36 .............................. ATCCGCGAAAAAAAGCGGATTAGAAAGGTTTACGAG 2481 30 100.0 34 .............................. CCATGCAGGCGGGGCGTGGCCGCTTTATCGTAGT 2545 30 100.0 37 .............................. TTGTGCCGGAAGGCTCGCTGGCGTACTATCGAGTTGC 2612 30 100.0 34 .............................. CGCAATTTGGCAAAGAGCTGGGAATACTCGAGGT 2676 30 100.0 37 .............................. TATCCGCAGCTGGCTGATAACAGATGCGGCACCCTCA 2743 30 100.0 35 .............................. TGCGCGATTCACGAACTGAACCGAGACCCCAAGAT 2808 30 100.0 34 .............................. CTTCTTCTTAGAAAACCACAACTACCGTCTTCAA 2872 30 100.0 36 .............................. TTTTTTTAGAAAGAATCCCGCCTCGGACATAGCCGA 2938 30 100.0 36 .............................. TCCGCATCTCGATGTTGCCGGCAATCGCAACTGCAC 3004 30 100.0 37 .............................. TTTGATTCTATTCCGTTAAAACCCACTTTTTTCGTTA 3071 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTACCCTGCTTTGCAGCTCCACAAAGCGATTATAAGAGACAAGATGTGGAAACTCGGATCGACAAGAATGGGTGATGTATTGAAGATAAAAAGCTTTCAAATCTCGGTATCTTGACAGATGAAACAGGATCAGGATGGTCATGACCTCACTGTCCGACATCTTAAACTTTCTATTCCTGCCTTTTTTGTCTGCCTCTTCGAGGGTCTTTTTCTTGATTGTTTCATCAAAAAGCTTGGAGAAATCATCTATGATGCAAAAAACATCAACTATATTTGTCTTCATAAAGTAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 10059-10885 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOEL01000010.1 Porphyromonas gingivalis strain MP4-504 NODE_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10059 36 100.0 29 .................................... TTTTCAGGTTATTTATTATCTCTTCGTGT 10124 36 100.0 30 .................................... ATTCGAAATCTTCATCATTAAAAAGTGATT 10190 36 100.0 30 .................................... AAGATTTAGTGGACAAGGATAATCGTATTC 10256 36 100.0 30 .................................... TATGACTATGACAACCTGCAAAGCATCTGC 10322 36 100.0 30 .................................... GAAACGAAAGAAGTAAAGAACAACGACGTG 10388 36 100.0 30 .................................... CCCCTCGTATATTTCCTTGCCGTTTTTGTC 10454 36 100.0 30 .................................... AAAGACAGAAATGGAATGAAATTCCTCTTT 10520 36 100.0 30 .................................... GGCACCGATGAGAAAACTTTTTGTCTTCAT 10586 36 100.0 30 .................................... CCCTTCAGAATAGGTCAGATTGAGGATGAT 10652 36 100.0 30 .................................... CCCTTCAGAATAGGTCAGATTGAGGATGAT 10718 36 100.0 30 .................................... CCCTTCAGAATAGGTCAGATTGAGGATGAT 10784 36 100.0 30 .................................... CCCGTTGTTTTTTGCTTGAATTATGTCGTC 10850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAGATGGATAGAGGAAGTGTAACTGCCGATTGTGTTGGTGCAGAGCTGTTCGTCCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTTACGCTCGGATTGCTACGCTTGCTTCGAAGGCGCGGTCCCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATTTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGGGTGATGGGCTTCTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //