Array 1 11002-12920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVJ010000007.1 Erwinia amylovora strain Ea435 Ea_435_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11002 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 11063 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 11124 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 11185 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 11246 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 11307 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 11368 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 11429 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 11490 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 11551 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 11612 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 11673 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 11734 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 11795 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 11856 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 11917 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 11978 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 12039 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 12100 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 12161 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 12222 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 12283 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 12344 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 12405 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 12466 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 12527 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 12588 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 12649 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 12710 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 12771 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 12832 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 12893 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23828-25810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVJ010000007.1 Erwinia amylovora strain Ea435 Ea_435_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23828 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 23889 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 23950 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 24011 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 24072 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 24133 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 24195 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 24256 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 24317 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 24378 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 24439 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 24500 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 24561 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 24622 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 24683 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 24744 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 24805 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 24866 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 24927 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 24988 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 25049 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 25110 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 25171 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 25233 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 25294 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 25355 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 25416 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 25477 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 25538 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 25599 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 25660 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 25721 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 25782 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 35274-35602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVJ010000007.1 Erwinia amylovora strain Ea435 Ea_435_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35274 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 35334 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 35394 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 35454 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 35514 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 35575 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //