Array 1 219129-220743 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTFW01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219129 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 219190 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 219251 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 219312 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219373 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219434 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 219495 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 219556 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 219617 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 219678 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 219739 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 219800 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 219861 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 219922 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 219983 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220044 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220105 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 220166 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220228 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220289 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220350 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220411 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 220472 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 220533 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 220594 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 220655 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 220716 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236876-238352 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTFW01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 236876 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 236937 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 236999 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237060 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 237121 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 237182 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 237243 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 237304 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 237365 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 237426 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 237487 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 237548 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 237609 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 237671 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 237774 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 237835 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 237896 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 237957 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238018 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 238079 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 238140 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 238201 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 238262 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238323 29 96.6 0 A............................ | A [238349] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //