Array 1 102099-102736 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBP01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001371 NODE_2_length_287976_cov_33.2204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102099 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 102160 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 102221 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 102282 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 102343 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 102404 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 102465 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 102526 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 102587 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 102648 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 102709 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119360-122257 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBP01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001371 NODE_2_length_287976_cov_33.2204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119360 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 119421 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 119482 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 119543 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 119604 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 119665 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 119726 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 119787 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 119848 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 119909 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 119970 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 120031 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 120092 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 120153 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 120214 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 120275 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 120336 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 120397 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 120458 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 120519 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 120580 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 120641 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 120702 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 120763 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 120824 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 120885 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 120946 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 121007 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 121068 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 121129 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 121190 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 121251 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 121312 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 121373 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 121434 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 121495 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 121556 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 121617 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 121678 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 121739 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 121800 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 121861 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 121922 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 121983 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 122044 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 122105 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 122167 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 122228 29 96.6 0 ............T................ | A [122255] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //