Array 1 67080-60814 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQPT01000033.1 Acinetobacter baumannii strain Lah-14 Pa17op_S10_L001_R1_001_trimmed_contig_33_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 67079 30 100.0 30 .............................. GTGAATAAGATATAGACTTATCTTTATCCA 67019 30 96.7 30 ............................A. TAAGGGATAGTTTGCTCATGCATGACAGTA 66959 30 93.3 30 ............................GC TTTTTGCTCTCTTACAGTGGTTCTTATAAA 66899 30 93.3 30 ............................AA CACCCACCATTGTTTCGGCTTAAAGAAGTC 66839 30 93.3 30 ............................CA ATTGAGCCATGCTTAGCAATTGATTTTTTA 66779 30 93.3 30 ............................AG ACAAATCTTGAACGGCAAAACCTTCCGGAA 66719 30 96.7 30 .............................A GACATGACCACGTAAAAGCAAACGGAACCA 66659 30 93.3 30 ............................AC AAAATGCAACTATGCAAGCTGGATTTCCGC 66599 30 93.3 30 ............................GG CCAAAAGAAGGGGAAGAGTGTTGTTACATA 66539 30 96.7 30 .............................C TTTGCTCTCAGCCTCATTATTTACACGAAT 66479 30 93.3 30 ............................AA ATTGATTGACAATGCCCCATGTTTTGCCAA 66419 30 93.3 30 ............................AG ACGGCACCAGCGTTGCTACTGTGGCTTATA 66359 30 96.7 30 .............................A AAAAGCCTAGTGATTTTAGAAATTTTTCAA 66299 30 96.7 30 .............................A ATGGTTTTTGCATCATATGGAACTGGTACG 66239 30 93.3 30 ............................AC TAAAGAAGTTAGAGTCAAAAACCAAACCAC 66179 30 93.3 30 ............................GC CACAGCATAAGCAATACTTCGCGCTGAATG 66119 30 96.7 30 ............................A. CCATAGCAATTTCAGACCGCATAGGCTTAA 66059 30 96.7 30 ............................A. GACAGGACATGACAAGGAGGCGGTATGAAA 65999 30 93.3 30 ............................AA TTAAATCCAATTTCCCTAAATCCTTGAACA 65939 30 100.0 30 .............................. ACTACCGAATACAAGGTGGAAAGAATGCAG 65879 30 93.3 30 ............................AA GTAAGCTGAACGTAGCCGCGACCATAATAT 65819 30 93.3 30 ............................AG ATCAATACACCATTGTCAGGTCTTGATACA 65759 30 100.0 30 .............................. GTTGAGCACCAAACCACGAAATATCAACAT 65699 30 93.3 30 ............................AA CCGCGCCAGATTTAGCAACAGTAAAGTTTG 65639 30 96.7 30 ............................G. TCAGGGTTGTATCTGTTAGGATATGAGTAA 65579 30 96.7 30 .............................A AGCTTTTTTTTGATTACTGGTAGTTTAATG 65519 30 100.0 30 .............................. TTGGAGCCTTGCCGCCATCTTCGATTTTTG 65459 30 93.3 30 ............................GC AACCGTTGGTTTTAAGTTAGACCTAATGGT 65399 30 93.3 30 ............................AC AAATGCATAACAGTATCGGTAGCTAATTGA 65339 30 100.0 30 .............................. GACTGTAAATTGCCCTGCTGGAGCAGTATT 65279 30 96.7 31 .............................C ATGTTCTTGAATTGGAGCGCAGACGAGATCA 65218 30 96.7 30 ............................A. TAATGGTCTTGACCGTGTTTACAACGAAGA 65158 30 96.7 30 ............................A. ATACACGCCAATCTTGATTGACAACATCAC 65098 30 93.3 30 ............................CC GTACATGTTGACGTAATCATGTTCATCCTT 65038 30 93.3 30 ............................AC GAATTCCTTTTGCGCATGGCGCATACCAAG 64978 30 100.0 30 .............................. GTGCCTCTTTGGTCAACTGTGACAAGCCAA 64918 30 100.0 30 .............................. AAACCCATACGCTCCAGACAACATTACAAG 64858 30 93.3 30 ............................GA CATGAGTGGGAATATGAGGAAGGTAATTTA 64798 30 100.0 30 .............................. TTAGCTCATTGCTGCGTTGCTCCAATTTAA 64738 30 100.0 30 .............................. CAGAAATCTTTTGTTGAGTGATTGGCGGAA 64678 30 93.3 30 ............................AG AGTCACAAATTTATTTAGGCAAGAAAAATA 64618 30 93.3 30 ............................AC CAAGCCCATTATTCGGGTTTACCGTATTGT 64558 30 96.7 30 ............................A. GCAGAATTAACCCACACAAATCAGCAATAA 64498 30 93.3 30 ............................CC AAAAGGGATTAAGTTCACAAAAGATTTGGC 64438 30 100.0 30 .............................. TTTCAGCCGCCTTCAACATGGCTTCAGCTT 64378 30 96.7 30 ............................A. GCCAAGCGAGATAAGGAAAAGCAAGATAAA 64318 30 93.3 30 ............................CA TCCTTAAATACTGAGATCTTTTTTGATCTT 64258 30 96.7 30 .............................C TGCACGTAGCCTTGCAACGCCCGATTCAAC 64198 30 96.7 30 ............................A. TGTGTTGTCTAAAACAGTCTCACCCTCATT 64138 30 93.3 30 ............................AA TGACATTTATTGAGTGGTGTTCTAGTGGCG 64078 30 96.7 30 .............................C TCGGCACAGGAGTGCATTCGAAGTTGATGA 64018 30 96.7 30 .............................G AATGGGTATTAGAACTCAGTGAAGATATGT 63958 30 93.3 30 ............................CA CTTGGGCATGTTCTTAGATCCAGACACAAA 63898 30 96.7 30 .............................C TACCTGCTAATAGCTTCTTTGCCCTAGTTC 63838 30 100.0 30 .............................. GCTTAACCTTCACGCCATTTGGATAAACTG 63778 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 63718 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 63658 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 63598 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 63538 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 63478 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 63418 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 63358 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 63298 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 63238 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 63178 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 63118 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 63058 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 62998 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 62938 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 62878 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 62818 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 62758 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 62698 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 62638 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 62578 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 62518 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 62458 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 62398 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 62338 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 62278 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 62218 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 62158 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 62098 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 62038 30 93.3 23 ............................AA CAATTGCCTGAGAGCCACCAGTA Deletion [61986] 61985 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 61925 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 61865 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 61805 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 61745 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 61685 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 61624 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 61564 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 61504 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 61444 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 61384 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 61324 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 61264 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 61204 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 61143 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 61083 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 61023 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 60963 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 60903 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 60843 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 105 30 95.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //